View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4240_high_12 (Length: 229)
Name: NF4240_high_12
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4240_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 19643099 - 19642895
Alignment:
| Q |
7 |
gccttcagggccagcttatgaaggggagttcaagagtggttatatggatggaataggtgcatacacttctactaatggggatacttataagggacaatgg |
106 |
Q |
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| T |
19643099 |
gccttcagggccagcttatgaaggggagttcaagagtggttatatggatggaataggtgcatacacttctactaatggggatacttataaaggacaatgg |
19643000 |
T |
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| Q |
107 |
gtaatgaatttgaaacatggtcatggtgagacgagttattcgaatggagataagtatgagggagaatggagaagaggtttgcaggatggacaagggagat |
206 |
Q |
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| T |
19642999 |
gtgatgaatttgaaacatggtcatggtgagacgagttattcgaatggagataagtatgagggagaatggagaagaggtttgcaggatggacaagggagat |
19642900 |
T |
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| Q |
207 |
atgag |
211 |
Q |
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| T |
19642899 |
atgag |
19642895 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 35256653 - 35256840
Alignment:
| Q |
23 |
tatgaaggggagttcaagagtggttatatggatggaataggtgcatacacttctactaatggggatacttataagggacaatgggtaatgaatttgaaac |
122 |
Q |
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| T |
35256653 |
tatgaaggcgaattcaagactggtttcatggatggtgtaggaacatacacgggtattaatggtgagacatataaaggacaatgggtgatgaatttaaaac |
35256752 |
T |
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| Q |
123 |
atggtcatggtgagacgagttattcgaatggagataagtatgagggagaatggagaagaggtttgcaggatggacaagggagatatga |
210 |
Q |
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| T |
35256753 |
atggtcatgggtataagagttatgtgaatggtgattggtatgaaggtgattggaggagaggggtgcaagatggaaaagggaggtatga |
35256840 |
T |
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