View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4240_high_2 (Length: 572)
Name: NF4240_high_2
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4240_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 47893846 - 47893422
Alignment:
| Q |
19 |
tatggacagtccgtccagtcatgggacctaccacgttggcattttcgaaccttgaattcgaacattcggaattggtcagttgagaaaacatggattggta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893846 |
tatggacagtccgtccagtcatgggacctaccacgttggcattttcgaaccttgaattcgaacattcggaattggtcagttgagaaaacatggattggta |
47893747 |
T |
|
| Q |
119 |
agtcgaaatcttcagtcatgcatgaagtggctatgtctatgtcgtttgaaatgaaatggttggagaatggtacttcctcgtaatgtgttgtgttccactc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
47893746 |
agtcgaaatcttcagtcatgcatgaagtgtgtatgtctatgtcgtttgaaatgaaatggttggagaatgttacttcctcgtattgtgttgtgttccactc |
47893647 |
T |
|
| Q |
219 |
agggattttaaggtttggaattttgatcatggtttcggatggattaaggaatggtgtatgagtgagtgagaggagtaattgattgcagtgtgactcgtgt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47893646 |
agggattttaaggtttggaattttgatcatggtttcggatggattaaggaatggtgtatgagtgactgagaggagtaattgattgcagtgtgactcgtgt |
47893547 |
T |
|
| Q |
319 |
agctagctagctatatatagaaagaaatgaatatca--atg---ctatgcatgtggtttgaaaaatttaactgtggtttgagtaagtctacttggcttgc |
413 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893546 |
agcta----gctatatatagaaagaaatgaataatatcatgtgcctatgtatgtggtttgaaaaatttaactgtggtttgagtaagtctacttggcttgc |
47893451 |
T |
|
| Q |
414 |
tttataatggtaattattggcttctacct |
442 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47893450 |
tttataatggtaattattggcttctacct |
47893422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 441 - 561
Target Start/End: Complemental strand, 47893378 - 47893258
Alignment:
| Q |
441 |
ctaaaaatgcaaatgccaaacttatcaatatatatgcaaatcttgtaaacttctcctaaatatccaatttgtcgactttgttttgatggaattgataaac |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893378 |
ctaaaaatgcaaatgccaaacttatcaatatatatgcaaatcttgtaaacttctcctaaatatccaatttgtcgactttgttttgatggaattgataaac |
47893279 |
T |
|
| Q |
541 |
caccctccattttgtcttcat |
561 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47893278 |
caccctccattttgtcttcat |
47893258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University