View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4240_low_1 (Length: 603)

Name: NF4240_low_1
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4240_low_1
NF4240_low_1
[»] chr8 (11 HSPs)
chr8 (17-591)||(41803878-41804451)
chr8 (161-382)||(41795681-41795898)
chr8 (520-579)||(41810544-41810603)
chr8 (520-580)||(41796901-41796961)
chr8 (191-435)||(41803588-41803828)
chr8 (435-482)||(41795568-41795615)
chr8 (179-314)||(37700790-37700920)
chr8 (276-331)||(41810379-41810434)
chr8 (436-482)||(41803273-41803319)
chr8 (436-482)||(41810255-41810301)
chr8 (289-331)||(41803403-41803445)


Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Complemental strand, 41804451 - 41803878
Alignment:
Q  17 acttattaaattcacggatacatgataaggccaattctctatcagctgatcnnnnnnn-aagtcaacatttctatcatgtaactctaacttctgctgtgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  41804451 acttattaaattcacggatacatgataaggccaattctctatcagctgatcttttttttaagtcaacatttctatcatgtaactctaacttctgctgtgt 41804352  T
Q  116 caaatcactgatctcttcaatgttgacccttgcttgctctttatattgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagt 215  Q
     ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41804351 taaagcactgatctcttcaatgttgacccttgcttgctcttcatattgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagt 41804252  T
Q  216 ggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaataagtttgattatcctttttactttgtcttcaatttct 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  |||||||||||||    
T  41804251 ggttccctcttcaaaacttctgtcggggtgccatcctcgttaaggtcgtgatcattaataagtaagtttgattatcctttttact--gtcttcaatttct 41804154  T
Q  316 gtagaaaaagtaaaaaggtccaaatcatttgttcgagctatcataaggtgatatacaaaaatcatagcatattttgcatcacgagcttccatcatatgac 415  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  41804153 gtagaaaaagtaaaaaagtccaaatcatttgttcgagctaccataaggtgatatacaaaaatcatagcatattttgcatcgcgagcttccatcatatcac 41804054  T
Q  416 aattcagaagtcatggtgcatagagattgtacctgctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgata 515  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41804053 aattcagaagtcatggtacatagagattgtacctgctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgata 41803954  T
Q  516 agattgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggttccgcggcccta 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41803953 agattgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggttccgcggcccta 41803878  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 161 - 382
Target Start/End: Complemental strand, 41795898 - 41795681
Alignment:
Q  161 ttgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaagg 260  Q
    ||||| |||||  |||||||||||| ||| || ||||| ||| |||||||||||||||||||||||||||| |||||| ||||| ||||| || | ||||    
T  41795898 ttgtgtgtaaatcaattggtattgattgtggatatcctcaatcaattcagcaagtggttccctcttcaaaagttctgctggggtaccatcttcttcaagg 41795799  T
Q  261 tcgtgatcattaacaaataagtttgattatcctttttactttgtcttcaatttctgtagaaaaagta-aaaaggtccaaatcatttgttcgagctatcat 359  Q
    | || ||| ||    ||||||||| | ||||||||| |||||||||||||||||||||| |||| || |||| ||| |||||||||||  || | | |||    
T  41795798 ttgtcatcttt----aataagtttcaatatccttttgactttgtcttcaatttctgtagcaaaattagaaaaagtcgaaatcatttgtatgatc-aacat 41795704  T
Q  360 aaggtgatatacaaaaatcatag 382  Q
    ||||||||||||| | |||||||    
T  41795703 aaggtgatatacatatatcatag 41795681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 520 - 579
Target Start/End: Complemental strand, 41810603 - 41810544
Alignment:
Q  520 tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggt 579  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  41810603 tgatagcagatagttcctcttctctttctttggacttcatttcaagttctgaaatttggt 41810544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 580
Target Start/End: Complemental strand, 41796961 - 41796901
Alignment:
Q  520 tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggtt 580  Q
    ||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  41796961 tgatagcagatagctcctcttctctttctttggacttcatttcaagttctgaaatttggtt 41796901  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 191 - 435
Target Start/End: Complemental strand, 41803828 - 41803588
Alignment:
Q  191 gaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaataagtttgattat 290  Q
    |||||||| ||  |||| ||||| ||||||||||||||||| ||||||  || | |||||||||| ||| | || ||  ||||    ||||||||| |||    
T  41803828 gaaatcctcaaccaatttagcaaatggttccctcttcaaaagttctgctcggataccatcctcgtcaagtttgtcatatttaa----taagtttgaatat 41803733  T
Q  291 cctttttactttgtcttcaatttctgtagaaaaagt-aaaaaggtccaaatcatttgttcgagctatcataaggtgatatacaaaaatcatagcatattt 389  Q
    | ||  ||| ||||| | ||||||||||| |||||| ||||| |||||||||||||||| || | |||  | | ||||||||| |||||||||| |||||    
T  41803732 cattgctaccttgtcataaatttctgtaggaaaagtgaaaaaagtccaaatcatttgtttgatc-atccaaggctgatatacataaatcatagcgtattt 41803634  T
Q  390 tgcatcacgagcttccatcatatgacaattcagaagtcatggtgca 435  Q
    ||  |   || ||||| |||||| |||||||||  |||||||||||    
T  41803633 tgtgttgtgatcttccgtcatatcacaattcagttgtcatggtgca 41803588  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 41795615 - 41795568
Alignment:
Q  435 atagagattgtacctgctttagctccctggagctgcttttctttatca 482  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  41795615 atagagattgtacctgttttagctccctggagctgctcttctttatca 41795568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 37700920 - 37700790
Alignment:
Q  179 gtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaat 278  Q
    ||||||| ||| |||||||| ||||| |  ||||||||||||||||||||||| |||||| ||||| ||||| || | ||||| || ||| ||    |||    
T  37700920 gtattgattgtggaaatcctcaataa-taaagcaagtggttccctcttcaaaatttctgctggggtaccatcgtcttcaaggttgtcatcttt----aat 37700826  T
Q  279 aagtttgattatcctttttactttgtcttcaatttc 314  Q
    |||||| | ||| ||||| |||||||||||||||||    
T  37700825 aagtttcaatattcttttcactttgtcttcaatttc 37700790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 41810434 - 41810379
Alignment:
Q  276 aataagtttgattatcctttttactttgtcttcaatttctgtagaaaaagtaaaaa 331  Q
    ||||||||| |  ||||||||||||||||||||||||||| ||| |||||||||||    
T  41810434 aataagtttcaaaatcctttttactttgtcttcaatttctataggaaaagtaaaaa 41810379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 41803319 - 41803273
Alignment:
Q  436 tagagattgtacctgctttagctccctggagctgcttttctttatca 482  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||    
T  41803319 tagagattgtaccttttttacctccctggagctgcttttctttatca 41803273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 41810301 - 41810255
Alignment:
Q  436 tagagattgtacctgctttagctccctggagctgcttttctttatca 482  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||    
T  41810301 tagagattatacctgttttagctccctgaagctgcttttctttatca 41810255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 41803445 - 41803403
Alignment:
Q  289 atcctttttactttgtcttcaatttctgtagaaaaagtaaaaa 331  Q
    |||||||||||||||||| |||||||| ||| |||||||||||    
T  41803445 atcctttttactttgtctccaatttctataggaaaagtaaaaa 41803403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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