View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4240_low_13 (Length: 238)
Name: NF4240_low_13
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4240_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 50326419 - 50326245
Alignment:
| Q |
41 |
taaatgtcacaaattggaagattaaaaacaaggctaaaaatcccaacaggtttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccg |
140 |
Q |
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| T |
50326419 |
taaatgtcacaaattggaagattaaaaacaaggctaaaaatcccaacaggtttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccg |
50326320 |
T |
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| Q |
141 |
gtaatagcacattgcgcaatctgttcatgagaagtgttatctgatgtacatgcaagtgctgcaccagtgattgct |
215 |
Q |
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| T |
50326319 |
gtaatagcacattgcgcaatctgttcatgagatgtgttatctgatgtacatgcaagtgctgctccagtgattgct |
50326245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 50326502 - 50326457
Alignment:
| Q |
1 |
tttgaaaaagagaactacaaattcagaaagaaatagttgctaaatg |
46 |
Q |
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| T |
50326502 |
tttgaaaaagagaactacaaattcagaaagaaatagttgctaaatg |
50326457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 13202291 - 13202354
Alignment:
| Q |
91 |
tttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccggtaatagcacattg |
154 |
Q |
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| T |
13202291 |
tttagaaaatccctttgagaagatttgcaacagttgagattgcagctccagtgatagcacattg |
13202354 |
T |
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