View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4240_low_18 (Length: 206)
Name: NF4240_low_18
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4240_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 41759950 - 41760125
Alignment:
| Q |
14 |
catcatatctcactacttacaatctaccaaacctcatttcattctctttctttacagagtgaacactatggacaatatgtgtcaactaaatttccaaaat |
113 |
Q |
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| T |
41759950 |
catcatatctcactacttacaatctaccaaacctcatttcattctctttcttta--gagtgaacactatggacaatatgtgtcaactaaatttccaaaat |
41760047 |
T |
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| Q |
114 |
atatcaacactgactcaagggatgaaaactcattcccatcttatgaaatttacacaaatattcatttcactatctgtg |
191 |
Q |
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| T |
41760048 |
atatcaacactgactcaagggatgaaaactcattcccatcttatgaaatttacacaaatattcatttcactatctgtg |
41760125 |
T |
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Back To:
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Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 41794854 - 41794977
Alignment:
| Q |
68 |
cagagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattcccatcttatgaaatttaca |
167 |
Q |
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|||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
41794854 |
cagagtaaacactatggacaatatgtgtcgattaaaattccaaaatatatcaacactgactcaagggatgaaaactcattcaaatctaatgaaatttaca |
41794953 |
T |
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| Q |
168 |
caaatattcatttcactatctgtg |
191 |
Q |
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| T |
41794954 |
caaatattcatttcactatctgtg |
41794977 |
T |
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