View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4240_low_4 (Length: 454)

Name: NF4240_low_4
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4240_low_4
NF4240_low_4
[»] chr3 (2 HSPs)
chr3 (65-315)||(8528529-8528783)
chr3 (375-444)||(8528336-8528405)
[»] chr5 (10 HSPs)
chr5 (389-438)||(1418934-1418983)
chr5 (389-438)||(16308577-16308626)
chr5 (389-438)||(27756783-27756832)
chr5 (74-135)||(42120001-42120062)
chr5 (19-67)||(34545168-34545216)
chr5 (19-66)||(30192425-30192472)
chr5 (19-68)||(18512744-18512793)
chr5 (389-438)||(25916276-25916325)
chr5 (389-438)||(30332295-30332344)
chr5 (24-60)||(40625013-40625049)
[»] chr4 (12 HSPs)
chr4 (389-438)||(42889808-42889857)
chr4 (388-438)||(18597643-18597693)
chr4 (389-438)||(54534990-54535039)
chr4 (33-67)||(43175666-43175700)
chr4 (389-438)||(19994510-19994559)
chr4 (389-438)||(32082631-32082680)
chr4 (389-438)||(42977210-42977259)
chr4 (389-438)||(42978917-42978966)
chr4 (389-438)||(48711870-48711919)
chr4 (389-438)||(48713460-48713509)
chr4 (389-438)||(55947372-55947421)
chr4 (389-438)||(55948951-55949000)
[»] chr1 (10 HSPs)
chr1 (389-438)||(24438946-24438995)
chr1 (19-60)||(50036786-50036827)
chr1 (389-438)||(50317048-50317097)
chr1 (17-60)||(49395542-49395585)
chr1 (388-438)||(31321020-31321070)
chr1 (389-438)||(7653698-7653747)
chr1 (26-67)||(7942906-7942947)
chr1 (389-438)||(16673254-16673303)
chr1 (389-438)||(36145356-36145405)
chr1 (390-438)||(7185854-7185902)
[»] chr8 (4 HSPs)
chr8 (389-438)||(3158035-3158084)
chr8 (389-438)||(26719397-26719446)
chr8 (19-64)||(13782170-13782215)
chr8 (389-438)||(25265903-25265952)
[»] chr7 (8 HSPs)
chr7 (389-438)||(31392070-31392119)
chr7 (389-438)||(3704410-3704459)
chr7 (389-438)||(40028469-40028518)
chr7 (389-438)||(45277965-45278014)
chr7 (389-437)||(11671285-11671333)
chr7 (17-65)||(13644355-13644403)
chr7 (33-65)||(14102455-14102487)
chr7 (33-65)||(14412472-14412504)
[»] chr2 (5 HSPs)
chr2 (389-428)||(37393901-37393940)
chr2 (395-438)||(45493030-45493073)
chr2 (395-438)||(45500772-45500815)
chr2 (400-438)||(22053148-22053186)
chr2 (19-63)||(14002455-14002499)
[»] scaffold0512 (1 HSPs)
scaffold0512 (393-435)||(10125-10167)
[»] chr6 (3 HSPs)
chr6 (389-438)||(1256726-1256775)
chr6 (389-438)||(1258438-1258487)
chr6 (395-435)||(1443435-1443475)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 65 - 315
Target Start/End: Complemental strand, 8528783 - 8528529
Alignment:
Q  65 aaactgaatattgtattgtgaatttatgttgcgttcctcacactttccaatttttg-tccttttgttctttttccaatttcttatgacatcatgatgtga 163  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||    
T  8528783 aaactgaatattgtattgtcaatttatgttccgttccacacactttcaaattttttatccttttgttctttttccaatttcttatgccatcatgatgtga 8528684  T
Q  164 gctatgtattgtttgcttcagttcaagtcatccttcacgatgcatagttgtggtgaagggttagtct-ttttggggagagaattgtcaatca-------t 255  Q
     ||||||     |||||||||||||||||||||||||| |||||| |||||||||||||||||||||  || ||||||||||||||||||||       |    
T  8528683 actatgt-----ttgcttcagttcaagtcatccttcactatgcatggttgtggtgaagggttagtctccttgggggagagaattgtcaatcattgtggtt 8528589  T
Q  256 tgcgttcatattcaatttgaaaattaatctctacagttgtacgtaaaagatatttgattc 315  Q
    |||  ||||| |||||||||||||||||||| | ||||||||| |||||||||| |||||    
T  8528588 tgcagtcataatcaatttgaaaattaatctcaagagttgtacgcaaaagatattcgattc 8528529  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 8528405 - 8528336
Alignment:
Q  375 gaagcttaagtgattaaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatcttcctttg 444  Q
    ||||||||| || |||||||||||| |||| ||||||||| ||| ||||||| || ||||||||| ||||    
T  8528405 gaagcttaaatggttaaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttg 8528336  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 1418983 - 1418934
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  1418983 taaatcgtccctgtaatttgacgtgttttttgttttcgtccctgtatctt 1418934  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 16308577 - 16308626
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||| ||||||||| |||||||||||||||||||    
T  16308577 taaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgtatctt 16308626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 27756832 - 27756783
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| | ||| ||| |||||||||||||||||||||||||||||    
T  27756832 taaatcgtccctctaagttcgcgtgttttttgttttcgtccctgtatctt 27756783  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 42120062 - 42120001
Alignment:
Q  74 attgtattgtgaatttatgttgcgttcctcacactttccaatttttgtccttttgttctttt 135  Q
    |||||||| | |||||| | || |||||| ||||||||||||||| ||||||||||||||||    
T  42120062 attgtattttcaatttacgctgtgttccttacactttccaattttcgtccttttgttctttt 42120001  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 34545216 - 34545168
Alignment:
Q  19 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatactcaaa 67  Q
    |||| |||||||| |||||  ||||||||||||||||||||||||||||    
T  34545216 ttacatgtgtttttcagccctatcaaatgtgtcaacagcaatactcaaa 34545168  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 30192472 - 30192425
Alignment:
Q  19 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatactcaa 66  Q
    ||||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  30192472 ttactcgtgtttctcagtcaaatcaaatgtgtcaacagcaatactcaa 30192425  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 18512744 - 18512793
Alignment:
Q  19 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatactcaaac 68  Q
    ||||| ||||||  ||||||||  ||||||||||||||||||||||||||    
T  18512744 ttactcgtgtttctcagccaaactaaatgtgtcaacagcaatactcaaac 18512793  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 25916325 - 25916276
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||||||||| ||  ||||||||| ||||| |||||||||||||    
T  25916325 taaatcgtccatgtaatttggcgtgtttttggtttttgtccctgtatctt 25916276  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 30332295 - 30332344
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||| |||||||||||||||||||||||||    
T  30332295 taaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatctt 30332344  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 40625013 - 40625049
Alignment:
Q  24 tgtgttttccagccaaatcaaatgtgtcaacagcaat 60  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40625013 tgtgtttctcagccaaatcaaatgtgtcaacagcaat 40625049  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 42889857 - 42889808
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  42889857 taaatcgtccctgtaagttcacgtgttttttgttttcgtccttgtatctt 42889808  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 18597643 - 18597693
Alignment:
Q  388 ttaaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    ||||||||||||||||| ||  ||||||||| |||||||||||||||||||    
T  18597643 ttaaatcgtccatgtaatttgccgtgtttttggttttcgtccctgtatctt 18597693  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 54534990 - 54535039
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||| ||||    
T  54534990 taaatcgtccatgtaagttcgcgtgtttttggttttcgtccctgtgtctt 54535039  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 43175700 - 43175666
Alignment:
Q  33 cagccaaatcaaatgtgtcaacagcaatactcaaa 67  Q
    |||||||| ||||||||||||||||||||||||||    
T  43175700 cagccaaaccaaatgtgtcaacagcaatactcaaa 43175666  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 19994510 - 19994559
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  19994510 taaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctt 19994559  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 32082680 - 32082631
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  32082680 taaatcgtccgtgtaatttggcgtgtttttggttttcgtccctgtatctt 32082631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 42977210 - 42977259
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  42977210 taaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatctt 42977259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 42978966 - 42978917
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  42978966 taaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatctt 42978917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 48711870 - 48711919
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  |||||||||||||||||||| ||||||||    
T  48711870 taaatcgtccttgtaattttgcgtgttttttgttttcgtccttgtatctt 48711919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 48713509 - 48713460
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  48713509 taaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctt 48713460  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 55947372 - 55947421
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| || |||| ||||| |||||||||||||||||||    
T  55947372 taaatcgtccctgtaatttgacgtatttttggttttcgtccctgtatctt 55947421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 55949000 - 55948951
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  55949000 taaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatctt 55948951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 24438995 - 24438946
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  24438995 taaatcgtccctgtaaattcgcgtgtttttggttttcgtccctgtatctt 24438946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 50036827 - 50036786
Alignment:
Q  19 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaat 60  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  50036827 ttacttgtgtttctcagccaaatcaaatgtgtcaacagcaat 50036786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 50317097 - 50317048
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||||||||| ||| |||||||||  ||||||||||||||||||    
T  50317097 taaatcgtccatgtaagttcgcgtgtttttgattttcgtccctgtatctt 50317048  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 49395585 - 49395542
Alignment:
Q  17 aattacttgtgttttccagccaaatcaaatgtgtcaacagcaat 60  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  49395585 aattactcgtgtttttcagccaaatcaaatgtgtcaacaacaat 49395542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 31321020 - 31321070
Alignment:
Q  388 ttaaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    ||||||| ||| ||||| ||| ||||||||| |||||||||||||||||||    
T  31321020 ttaaatcatccctgtaagttcgcgtgtttttggttttcgtccctgtatctt 31321070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 7653698 - 7653747
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||| |||||||||||||||||||||||||    
T  7653698 taaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatctt 7653747  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 7942947 - 7942906
Alignment:
Q  26 tgttttccagccaaatcaaatgtgtcaacagcaatactcaaa 67  Q
    |||||| ||||||||||||||||||| ||| |||||||||||    
T  7942947 tgtttttcagccaaatcaaatgtgtccacaacaatactcaaa 7942906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 16673303 - 16673254
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  16673303 taaatcgtccctgtaattttgcgtgtttttggttttcgtccctgtatctt 16673254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 36145356 - 36145405
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||| |||||||||||||||||||||||||    
T  36145356 taaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatctt 36145405  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 7185902 - 7185854
Alignment:
Q  390 aaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    ||||||||| ||||| ||  | |||||||||||||||||||||||||||    
T  7185902 aaatcgtccttgtaagtttgcatgttttttgttttcgtccctgtatctt 7185854  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 3158084 - 3158035
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||| ||||||||| |||||||||||||||||||    
T  3158084 taaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgtatctt 3158035  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 26719397 - 26719446
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||| ||||||||| ||| |||||||||||||||||||| ||||||||    
T  26719397 taaatcatccatgtaagttcgcgtgttttttgttttcgtccttgtatctt 26719446  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 13782215 - 13782170
Alignment:
Q  19 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatactc 64  Q
    ||||| ||||||  ||||||||||||||||||||||| ||||||||    
T  13782215 ttactcgtgtttctcagccaaatcaaatgtgtcaacaacaatactc 13782170  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 25265952 - 25265903
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||  ||||| ||  |||||||||||||||||||||||||||||    
T  25265952 taaatcgtctctgtaatttggcgtgttttttgttttcgtccctgtatctt 25265903  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 31392070 - 31392119
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| || |||||||||| |||||||||||||||||||    
T  31392070 taaatcgtccctgtaatttgacgtgtttttggttttcgtccctgtatctt 31392119  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 3704410 - 3704459
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||||||||| ||| | ||||||| |||||||||||| ||||||    
T  3704410 taaatcgtccatgtaagttcgcttgtttttggttttcgtccctttatctt 3704459  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 40028469 - 40028518
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  40028469 taaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctt 40028518  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 45278014 - 45277965
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  45278014 taaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctt 45277965  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 11671333 - 11671285
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatct 437  Q
    ||||||||||  |||| ||| |||||||||||||||||||| |||||||    
T  11671333 taaatcgtccccgtaagttcgcgtgttttttgttttcgtccatgtatct 11671285  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 13644403 - 13644355
Alignment:
Q  17 aattacttgtgttttccagccaaatcaaatgtgtcaacagcaatactca 65  Q
    ||||||| ||||||  |||||||||||||||||| |||| |||||||||    
T  13644403 aattactcgtgtttctcagccaaatcaaatgtgtgaacaacaatactca 13644355  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 14102455 - 14102487
Alignment:
Q  33 cagccaaatcaaatgtgtcaacagcaatactca 65  Q
    |||||||| ||||||||||||||||||||||||    
T  14102455 cagccaaaccaaatgtgtcaacagcaatactca 14102487  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 14412472 - 14412504
Alignment:
Q  33 cagccaaatcaaatgtgtcaacagcaatactca 65  Q
    |||||||| ||||||||||||||||||||||||    
T  14412472 cagccaaaccaaatgtgtcaacagcaatactca 14412504  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 37393901 - 37393940
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtc 428  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  37393901 taaatcgttcatgtaagttcacgtgttttttgttttcgtc 37393940  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 45493073 - 45493030
Alignment:
Q  395 gtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||    
T  45493073 gtccctgtaaattcgcgtgtttttggttttcgtccctgtatctt 45493030  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 45500815 - 45500772
Alignment:
Q  395 gtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||    
T  45500815 gtccctgtaaattcgcgtgtttttggttttcgtccctgtatctt 45500772  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 22053148 - 22053186
Alignment:
Q  400 tgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  22053148 tgtaagttcgcgtgttttttgttttcgtccctgtatctt 22053186  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 14002499 - 14002455
Alignment:
Q  19 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatact 63  Q
    ||||| ||||||  |||||||| ||||||||||||||||||||||    
T  14002499 ttactcgtgtttctcagccaaaccaaatgtgtcaacagcaatact 14002455  T

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Target: scaffold0512 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 10167 - 10125
Alignment:
Q  393 tcgtccatgtaaattcacgtgttttttgttttcgtccctgtat 435  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||    
T  10167 tcgtccttgtaaattcgcgtattttttgttttcgtccctgtat 10125  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 1256726 - 1256775
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  1256726 taaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatctt 1256775  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 1258487 - 1258438
Alignment:
Q  389 taaatcgtccatgtaaattcacgtgttttttgttttcgtccctgtatctt 438  Q
    |||||||||| ||||| ||  ||||||||| |||||||||||||||||||    
T  1258487 taaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctt 1258438  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 1443435 - 1443475
Alignment:
Q  395 gtccatgtaaattcacgtgttttttgttttcgtccctgtat 435  Q
    |||| ||||| ||||||||||||| ||||||||||||||||    
T  1443435 gtccctgtaagttcacgtgtttttggttttcgtccctgtat 1443475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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