View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4240_low_5 (Length: 374)

Name: NF4240_low_5
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4240_low_5
NF4240_low_5
[»] chr3 (7 HSPs)
chr3 (223-359)||(2257756-2257892)
chr3 (49-205)||(2257374-2257534)
chr3 (62-175)||(52653524-52653636)
chr3 (68-171)||(50914667-50914769)
chr3 (62-109)||(23686025-23686072)
chr3 (62-109)||(24058262-24058309)
chr3 (80-159)||(33709591-33709670)
[»] chr5 (2 HSPs)
chr5 (62-175)||(36202866-36202978)
chr5 (69-175)||(11043029-11043134)
[»] chr8 (2 HSPs)
chr8 (62-175)||(12729141-12729253)
chr8 (90-175)||(28696338-28696422)
[»] chr4 (5 HSPs)
chr4 (62-174)||(20251147-20251258)
chr4 (62-156)||(122829-122922)
chr4 (68-177)||(48780114-48780221)
chr4 (78-175)||(24129597-24129693)
chr4 (91-175)||(1495028-1495110)
[»] chr7 (2 HSPs)
chr7 (68-175)||(12239877-12239982)
chr7 (104-175)||(24533198-24533269)
[»] chr6 (1 HSPs)
chr6 (68-175)||(28612400-28612504)
[»] chr2 (1 HSPs)
chr2 (62-175)||(34681354-34681466)
[»] chr1 (4 HSPs)
chr1 (62-138)||(49053555-49053630)
chr1 (62-138)||(49061135-49061210)
chr1 (62-144)||(42263734-42263817)
chr1 (85-159)||(12634262-12634334)
[»] scaffold0007 (1 HSPs)
scaffold0007 (68-152)||(215647-215730)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 223 - 359
Target Start/End: Original strand, 2257756 - 2257892
Alignment:
Q  223 aattaaacagaatttaatatagaaaaaagattcattttccattgatcatatagaagcttttatccaaatcaaattgcagttccaataactaataaaatta 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2257756 aattaaacagaatttaatatagaaaaaagattcattttccattgatcatatagaagcttttatccaaatcaaattgcagttccaataactaataaaatta 2257855  T
Q  323 gcatattcaatccaaggtagtgaaacttgttggatct 359  Q
    |||||||||||||||||||||||||||||||||||||    
T  2257856 gcatattcaatccaaggtagtgaaacttgttggatct 2257892  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 2257534 - 2257374
Alignment:
Q  49 tacaaatgtttagtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgta------ttgtttg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      |||||||    
T  2257534 tacaaatgtttagtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagacca-tttagagaaaagatgtattgtttttgtttg 2257436  T
Q  143 acaattgaagcaatgtaggcattcatgaacaaattttggatataacataaaagaaataagcaa 205  Q
    ||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||    
T  2257435 acaattg-agcaatgtagtcactcatgaacaaattttggatattacataaaagaaataagcaa 2257374  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 52653524 - 52653636
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 161  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| | ||| |||||| |||||| ||||||||||||||||||| ||||||||      
T  52653524 tgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaatacc-ttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  162 cattcatgaacaaa 175  Q
    ||||||||||||||    
T  52653623 cattcatgaacaaa 52653636  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 50914769 - 50914667
Alignment:
Q  68 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 167  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||| || |||||||||||||||||| |  ||||||    
T  50914769 agaaattttcaaaatatatttgaaaagttgcaatggttaaatagagacc-ttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattca 50914671  T
Q  168 tgaa 171  Q
    ||||    
T  50914670 tgaa 50914667  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 23686025 - 23686072
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 109  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  23686025 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 23686072  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 24058262 - 24058309
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 109  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  24058262 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 24058309  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 33709591 - 33709670
Alignment:
Q  80 aatatatttgaaaagttgcaatgcttaaatagagaccattt-tagagaaaagatgtattgtttgacaattgaagcaatgta 159  Q
    |||||||||| |||||||||||| ||||| ||||||| ||| || | ||||| |||| || || |||||||||||||||||    
T  33709591 aatatatttggaaagttgcaatggttaaa-agagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 36202866 - 36202978
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 161  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| || |||||||||||| |||||||      
T  36202866 tgtgagagaaatttttaaaatatatttgaaaagttgcaatggttaaaaagagacc-ttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaac 36202964  T
Q  162 cattcatgaacaaa 175  Q
    ||||||||||||||    
T  36202965 cattcatgaacaaa 36202978  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 11043134 - 11043029
Alignment:
Q  69 gaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcat 168  Q
    |||||||  ||||||||||||||||||| ||  | ||||||| ||| | ||||||||||||| |||| |||||| | ||| || |||| ||| |||||||    
T  11043134 gaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatc-ttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccattcat 11043036  T
Q  169 gaacaaa 175  Q
    |||||||    
T  11043035 gaacaaa 11043029  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 12729141 - 12729253
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 161  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||| || | ||||||||||||||| ||      
T  12729141 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagacc-ttttagagaaaaggtgtaatgctcgacaattgaagcaatataac 12729239  T
Q  162 cattcatgaacaaa 175  Q
    ||||||||| ||||    
T  12729240 cattcatgagcaaa 12729253  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 28696422 - 28696338
Alignment:
Q  90 aaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 175  Q
    |||||||||||||  |||||||||| | ||||||||||||  |||| || || |||||||||||||||||  ||||||||||||||    
T  28696422 aaaagttgcaatgggtaaatagagatc-ttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccattcatgaacaaa 28696338  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 20251147 - 20251258
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 161  Q
    ||||| ||||||||  |||||||||||| |||||||||||  ||||||||||| | ||||||||||||  |||||||||||| ||||||| |||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatc-ttttagagaaaaagtgtattgtttgataattgaaacaatgtaac 20251245  T
Q  162 cattcatgaacaa 174  Q
     ||||||||||||    
T  20251246 tattcatgaacaa 20251258  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaat 156  Q
    ||||| ||||||||| ||| ||||||||||||||||||||  ||||||||| | ||||||||||||||  ||||||| |||||||||||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaataga-aacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 48780221 - 48780114
Alignment:
Q  68 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 167  Q
    ||||||||  |||||||||||| |||||||||||| ||||| | ||| | ||||||||||||| | || |||||||||||||||||||| ||   |||||    
T  48780221 agaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatc-ttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  168 tgaacaaatt 177  Q
    |||| |||||    
T  48780123 tgaataaatt 48780114  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 24129693 - 24129597
Alignment:
Q  78 aaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 175  Q
    |||||||||||  ||||| |||||| ||||||| || |  |||| ||| |||| ||||||| |||| |||||||||||||||  ||||||||||||||    
T  24129693 aaaatatatttagaaagtcgcaatggttaaatataggct-ttttggaggaaaggtgtattgcttgataattgaagcaatgtaaccattcatgaacaaa 24129597  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 1495110 - 1495028
Alignment:
Q  91 aaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 175  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||  | || ||| |||||||||| ||  ||||||||||||||    
T  1495110 aaagttgcaatggttaaa-agagaccattt-agagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaa 1495028  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 12239982 - 12239877
Alignment:
Q  68 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 167  Q
    ||||||||| ||||||||||||||| ||||||||| ||||| | ||||| |||||| |||||  ||||||| ||||||||||| ||||||||  ||||||    
T  12239982 agaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagacc-ttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  168 tgaacaaa 175  Q
    ||||||||    
T  12239884 tgaacaaa 12239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 24533198 - 24533269
Alignment:
Q  104 ttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 175  Q
    |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||||||  ||||||||||||||    
T  24533198 ttaaatagagatttttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaa 24533269  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 28612504 - 28612400
Alignment:
Q  68 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 167  Q
    ||||||||| ||||||||||| |||  ||| |||| |||||||||| || |||||||| |||| ||||||||||||||||||||||||| ||   |||||    
T  28612504 agaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggcc-ttttagagcaaaggtgtattgtttgacaattgaagcaatataacaattca 28612408  T
Q  168 tgaacaaa 175  Q
    ||||||||    
T  28612407 tgaacaaa 28612400  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 34681466 - 34681354
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 161  Q
    ||||| ||||||||  |||||||||||| || ||||||||| ||||| | | ||| ||||||||||||  |||| ||||||||||||||||||||||       
T  34681466 tgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaacc-ttttagagaaaaagtgtaatgtttgacaattgaagcaatgttac 34681368  T
Q  162 cattcatgaacaaa 175  Q
    |||| |||||||||    
T  34681367 cattgatgaacaaa 34681354  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 49053555 - 49053630
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 138  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| |||||| |||||||    
T  49053555 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaaaaggtgtattg 49053630  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 49061135 - 49061210
Alignment:
Q  62 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 138  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| ||| || |||||||    
T  49061135 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaataggtgtattg 49061210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 42263817 - 42263734
Alignment:
Q  62 tgtgatagaaatttcaaaaatata--tttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgac 144  Q
    ||||| || |||||| ||||||||  ||||||||||||||||| || |||||||| ||||| || |||||||||||||| |||||    
T  42263817 tgtgaaaggaatttccaaaatataaatttgaaaagttgcaatgattgaatagaga-catttaagtgaaaagatgtattgcttgac 42263734  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 12634262 - 12634334
Alignment:
Q  85 atttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgta 159  Q
    ||||||||| |||||||| ||||||||||||  |||||  |||| ||| || |||||||| ||||||||||||||    
T  12634262 atttgaaaaattgcaatgattaaatagagac--ttttaatgaaaggatataatgtttgactattgaagcaatgta 12634334  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 215647 - 215730
Alignment:
Q  68 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaag 152  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||||| | ||||  |||||| ||||| |||||||| |||||||    
T  215647 agaaatttccaaaatatatttagaaagttgcaatggttaaatagagatc-ttttgaagaaaatatgtaatgtttgacgattgaag 215730  T

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