View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4240_low_8 (Length: 315)
Name: NF4240_low_8
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4240_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 99 - 293
Target Start/End: Complemental strand, 44499604 - 44499410
Alignment:
| Q |
99 |
ccttttgtcttctcatcctccttcatttttacaacaacaagaccgaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaacct |
198 |
Q |
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| T |
44499604 |
ccttttgtcttctcatcctccttcatttttacaacaacaagaccgaaccggaacgaacctcacgaacggagcaggactacaaagcaacgccataaaacct |
44499505 |
T |
|
| Q |
199 |
tcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaaactgataaaacctgcacagtgaaaagctagaaaggtaagcttcaagatctg |
293 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44499504 |
tcaatgcaagaagagaaaccacgctgaacaaacaaagagaagaaactgataaaacctgcgcagtgaaaagctagaaaggtaagcttcaagatctg |
44499410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 39057072 - 39057113
Alignment:
| Q |
106 |
tcttctcatcctccttcatttttacaacaacaagaccgaacc |
147 |
Q |
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| T |
39057072 |
tcttctcttcctccttcattttcacgacaacaagaccgaacc |
39057113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 143 - 293
Target Start/End: Original strand, 24191645 - 24191795
Alignment:
| Q |
143 |
gaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaa |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24191645 |
gaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctgaacaaacaaagagaagaa |
24191744 |
T |
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| Q |
243 |
actgataaaacctgcacagtgaaaagctagaaaggtaagcttcaagatctg |
293 |
Q |
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| T |
24191745 |
actgataaaacctgcgcagtgaaaagctagaaaggtaagcttcaagatctg |
24191795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 44376354 - 44376162
Alignment:
| Q |
99 |
ccttttgtcttctcatcctccttcatttttacaacaacaagaccgaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaacct |
198 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44376354 |
ccttttgttttctcatcctccttcatttttacgacaacaagaccgaaccggaacgaacctcacgaacagagcaagactacaaagcaacgccataaaacct |
44376255 |
T |
|
| Q |
199 |
tcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaaactgataaaacctgcacagtgaaaagctagaaaggtaagcttcaagatc |
291 |
Q |
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| T |
44376254 |
tcaaagcatgaagagaaaccacgctggacagatagagagaagaagctgataaaacctgcgcagggaaaagccagaaaggtaagcttcgagatc |
44376162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 44385221 - 44385029
Alignment:
| Q |
99 |
ccttttgtcttctcatcctccttcatttttacaacaacaagaccgaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaacct |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44385221 |
ccttttgttttctcatcctccttcatttttacgacaacaagaccgaaccggaacgaacctcacgaacagagcaagactacaaagcaacgccataaaacct |
44385122 |
T |
|
| Q |
199 |
tcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaaactgataaaacctgcacagtgaaaagctagaaaggtaagcttcaagatc |
291 |
Q |
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|||||||| |||||||||||||||| ||| | | ||||||||| |||||||||||||| ||| ||||||| ||||||||||||||| ||||| |
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| T |
44385121 |
tcaaagcatgaagagaaaccacgctggacagatagagagaagaagctgataaaacctgcgcagggaaaagccagaaaggtaagcttcgagatc |
44385029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 27184348 - 27184268
Alignment:
| Q |
149 |
gaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaa |
229 |
Q |
| |
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|||||||||||| ||| |||| || ||||||||||||| ||||||||||||| ||||||||||||||||||| |||| |
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| T |
27184348 |
gaacgaacctcatgaatggagaaatactacaaagcaacatgggaaaaccttcaaagaaagaagagaaaccacgctcgacaa |
27184268 |
T |
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