View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4241_high_1 (Length: 478)
Name: NF4241_high_1
Description: NF4241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4241_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 39661511 - 39661048
Alignment:
| Q |
1 |
agctctactttactcctctactctatgattttttcatgtcttttt-cataattatcttatagtgactctcccacagtgttcaatttatgtatttaactca |
99 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||| ||||||| | ||||||||| |||||||| |||||||||| |
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| T |
39661511 |
agctctactttactcctctaatctatgattttttcatgaattttttcagaattatcttaaagtgactgtggcacagtgttaaatttatggatttaactca |
39661412 |
T |
|
| Q |
100 |
tatgcactgtcgctgtaaagnnnnnnnnnnnatattatatatgaatcgtattcgttagttattaaaaacagcttgccttttattataactatgttgaaag |
199 |
Q |
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|||||||||||| ||||||| |||||||| |||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||| |
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| T |
39661411 |
tatgcactgtcggtgtaaagattttttttttatattataaatgaatcgtaatcgttagatcttaaaaacagcttgacttttattataactatgttgaaag |
39661312 |
T |
|
| Q |
200 |
tcatacatattgattcttgtgatttgttgacagcatatcaatattacactcaaatttatttgtttttgttgcattaggggctagatgattgttataactc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39661311 |
tcatacatattgattcttgtgatttgttgacagcatatcaattttacac--aaatttatttgtttttgttgcattagggtctagatgattgttataactc |
39661214 |
T |
|
| Q |
300 |
atatttgtgattggattccttggtaaaattgtatcgtcggttcaccgagtgtaggaagttccttttatttttatatcaaaaaattagatgcaataaatta |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39661213 |
atatttgtgattggattccttggtaaaattgtattgtcggttcaccgagtgtaggaagttcctt------ttatatcaaaaaattagatgcaataaatta |
39661120 |
T |
|
| Q |
400 |
aggattaagtttgtggtttatattgtttataatgtccccttgtccataatatttactctatagtgatgatgt |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39661119 |
aggattaagtttgtggtttatattgtttataatgtccccttgtccataatatttactctatagtgatgatgt |
39661048 |
T |
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