View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4241_low_2 (Length: 471)

Name: NF4241_low_2
Description: NF4241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4241_low_2
NF4241_low_2
[»] chr7 (4 HSPs)
chr7 (259-461)||(18372802-18372993)
chr7 (18-76)||(16850079-16850137)
chr7 (167-205)||(18372747-18372785)
chr7 (18-79)||(31738973-31739034)
[»] chr4 (4 HSPs)
chr4 (18-79)||(34967086-34967147)
chr4 (18-79)||(9117438-9117499)
chr4 (18-75)||(54207235-54207292)
chr4 (18-73)||(27742873-27742928)
[»] chr3 (4 HSPs)
chr3 (18-73)||(18319605-18319660)
chr3 (18-76)||(11031761-11031819)
chr3 (18-76)||(52126422-52126480)
chr3 (18-75)||(46920105-46920162)
[»] chr1 (2 HSPs)
chr1 (18-75)||(38006998-38007055)
chr1 (18-78)||(51083355-51083415)
[»] chr8 (2 HSPs)
chr8 (18-73)||(3428480-3428535)
chr8 (18-72)||(11465584-11465638)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 259 - 461
Target Start/End: Original strand, 18372802 - 18372993
Alignment:
Q  259 tgttaaaaagatttgttctgtttatattcccatgaaaaaagatctgttcagtttatatnnnnnnnntatcttttctctttatccattatttatccattat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        |||||||||||||||           |||||||     
T  18372802 tgttaaaaagatttgttctgtttatattcccatgaaaaaagatctgttcggtttatataaaaaaaatatcttttctcttta-----------tccattaa 18372890  T
Q  359 gtaacagctataaataaatataaaaaatctttattctattcctcataaacaaaacccttacgtctcttgtacccacgaagtttgatttttgcatctctct 458  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18372891 gtaacagctataaataaatataaaaaatatttattctattcctcataaacaaaacccttacgtctcttgtacccacgaagtttgatttttgcatctctct 18372990  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 16850079 - 16850137
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacacccccta 76  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  16850079 cattcccatcctcatattcccaggaataaattttataacctggaaacaaacacccccta 16850137  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 18372747 - 18372785
Alignment:
Q  167 ataactgtatctacgttttgtccattaattttcaagacc 205  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18372747 ataactgtatctacgttttgtccattaattttcaagacc 18372785  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 31738973 - 31739034
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacaccccctaagt 79  Q
    ||||||||||||||||||   || |||||||||||||||| ||||||||||||| |||||||    
T  31738973 cattcccatcctcatattttaagaaataaattttataacctggaaacaaacacctcctaagt 31739034  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 34967147 - 34967086
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacaccccctaagt 79  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  34967147 cattcccatcctcatattcccaggaataaattttataacctggaaacaaacaccccctaagt 34967086  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 9117499 - 9117438
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacaccccctaagt 79  Q
    |||||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||    
T  9117499 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacacccccaaagt 9117438  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 54207292 - 54207235
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacaccccct 75  Q
    |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  54207292 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacaccccct 54207235  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 27742873 - 27742928
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacacccc 73  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  27742873 cattcccatcctcatattcccaagaataaattttataacctggaaacaaacacccc 27742928  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 18319660 - 18319605
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacacccc 73  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  18319660 cattcccatcctcatattcccaggaataaattttataacctggaaacaaacacccc 18319605  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 11031761 - 11031819
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacacccccta 76  Q
    |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||    
T  11031761 cattcccatcctcatattcctagaaataaattttataacctggaaacaaacacccccta 11031819  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 52126422 - 52126480
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacacccccta 76  Q
    |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||    
T  52126422 cattcccatcctcatattccaaggaataaattttataacctggaaacaaacacccccta 52126480  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 46920162 - 46920105
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacaccccct 75  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  46920162 cattcccatcctcatattcccaggaataaattttataacatggaaacaaacaccccct 46920105  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 38007055 - 38006998
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacaccccct 75  Q
    |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  38007055 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacaccccct 38006998  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 51083415 - 51083355
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacaccccctaag 78  Q
    |||||||||||||||||||| || |||||||||||||||  ||||||||||||||||||||    
T  51083415 cattcccatcctcatattccaaggaataaattttataacttggaaacaaacaccccctaag 51083355  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 3428535 - 3428480
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacacccc 73  Q
    |||||||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  3428535 cattcccatcctcatatttccaggaataaattttataacctggaaacaaacacccc 3428480  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11465638 - 11465584
Alignment:
Q  18 cattcccatcctcatattcccagtaataaattttataacccggaaacaaacaccc 72  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  11465638 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccc 11465584  T

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