View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4241_low_3 (Length: 409)
Name: NF4241_low_3
Description: NF4241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4241_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 3 - 401
Target Start/End: Complemental strand, 21769278 - 21768880
Alignment:
| Q |
3 |
tgaaggatgtaaaaatgcagaaatcaatagaggaatacattctgaagtcttcaaccaactccagnnnnnnncacggaaagactaaacttacagcataata |
102 |
Q |
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| T |
21769278 |
tgaaggatgtaaaaatgcagaaatcaatagaggaatacattctgaagtcttcaaccaactccagaaaaaaacacggaaagactaaacttacagcataata |
21769179 |
T |
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| Q |
103 |
atgtgcatcatatgagccaagcttatcaaattccctagaggatatgtcacatagccatatctcaatggaaccagaaactttgcctatggctaaaagcatc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21769178 |
atgtgcatcatatgagccaagcttatcaaattccctagaggatatgtcacatagccatatctcaatggaaccagaaactttgcctatggctaaaagcatc |
21769079 |
T |
|
| Q |
203 |
ttggaggggtactgaacatgcacagttactgaaagtactgaaactgggacggcatttgcagttataacctaattagacattgaaagttgcataaaggaat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21769078 |
ttggaggggtactgaacatgcacagttactgaaagtactgaaactgggacagcatttgcagttataacctaattagacattgaaagttgcataaaggaat |
21768979 |
T |
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| Q |
303 |
tattcacagagaagggatagaaatgaaaagaaatgcaaaaaataagtgagatgtacctccttcaataataaaaaggaatttggatcaacttctgatgat |
401 |
Q |
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| T |
21768978 |
tattcacagagaagggatagaaatgaaaagaaatgcaaaaaataagtgagatgtacctccttcaataataaaaaggaatttggatcaacttctgatgat |
21768880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 397
Target Start/End: Original strand, 32923689 - 32924077
Alignment:
| Q |
3 |
tgaaggatgtaaaaatgcagaaatcaatagaggaatacattctgaagtcttcaaccaactccagnnnnnnncacggaaagactaaacttacagcataata |
102 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| || ||||||||||||| ||||| | ||| | | |||||||| ||||||| |
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| T |
32923689 |
tgaaggatataaaaatggagaaatcaatagaggaatacaacctcaagtcttcaaccatctccaaaa------aaggaggggatgaacttacaccataata |
32923782 |
T |
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| Q |
103 |
atgtgcatcatatgagccaagcttatcaaattccctagaggatatgtcacatagccatatctcaatggaaccagaaactttgcctatggctaaaagcatc |
202 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32923783 |
atgtgcatcatatgacccaagcttatcaaattccctagaagatatgtcgcatatccatatctcaatggaaccagaaactttgcctatggctaagagcatc |
32923882 |
T |
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| Q |
203 |
ttggaggggtactgaacatgcacagttactgaaagtactgaaactgggacggcatttgcagttataacctaattagacattgaaagttgcataaaggaat |
302 |
Q |
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|||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||| | |||||||| ||||||| |
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| T |
32923883 |
ttggagggatattgaacatgcacagttactgaaagtaccgaaactgggacagcattgacagttataacctaattagaaattaagagttgcatgaaggaat |
32923982 |
T |
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| Q |
303 |
tattcacagagaagggatagaaatgaaaagaaatgcaaaaaataagtgagatgtacctccttcaataataaaaaggaatttggatcaacttctga |
397 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || |||||| || ||||||||||||| |
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| T |
32923983 |
cattcacaaagaagggatagaaatgaaaagaaatgcaaaaattaagtgggatgtacctccttcaataacaagaaggaagtttgatcaacttctga |
32924077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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