View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4241_low_4 (Length: 376)
Name: NF4241_low_4
Description: NF4241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4241_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 20417201 - 20416838
Alignment:
| Q |
1 |
aaaaccttactttatatatacactgttatgtacaccatagattgattgataattccaaattttcaatcgtattgtgttaatttccctcaaacaaaaattg |
100 |
Q |
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||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20417201 |
aaaactttactttatatatacactattatatacaccatagattgattgataattccaaattttcaattgtattgtgttaatttccctcaaacaaaaattg |
20417102 |
T |
|
| Q |
101 |
ttttgtgttaatgtgtgattcttcctcattgaaaatgtctccttcaccgattctacctcctgaactcatacaggaaatcctttcatggcttctgctggaa |
200 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
20417101 |
ttttgtgttaatgtgtgattcttcctcgttgataatgtctcctccaccgattctacctcctgaactcatacaggaaatcctttcatggcttccggtggaa |
20417002 |
T |
|
| Q |
201 |
cctctcgtgagattcagttgcgtgtctaaattatggaaatcactcatcttcaacctatcattcgtaaaactctactttcaaagatcacacaacaaaaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20417001 |
cctctcgtgagattcagttgcgtgtctaaattatggaaatcactcatcctcaacctatcattcgtaaaactctactttaaaagatcacacaacaaaaaca |
20416902 |
T |
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| Q |
301 |
cacacctcataattaccg---------tcgactaatctcaggtcctaattccatcctgagtgtg |
355 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20416901 |
cacacctcataattaccgttgaagaaatcgactaatctcaggtcctaattccatcctgagtgtg |
20416838 |
T |
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