View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4241_low_5 (Length: 371)
Name: NF4241_low_5
Description: NF4241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4241_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 10468047 - 10468418
Alignment:
| Q |
1 |
aagacagatattttttcacgagctaaatggtgaagcaaacagacaaaccaacagggtactgacacatatacaggtaggggccaacnnnnnnntccnnnnn |
100 |
Q |
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| T |
10468047 |
aagacagatattttttcacgagctaaatggtgaagcaaacagacaaaccaacagggtactgacacatatacaggtaggggccaacaaaaaaatccttttt |
10468146 |
T |
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| Q |
101 |
nnaacaaagtaaaaatctcaatcaaagaaaggtatttattacaaagaaatgtaccttgttgagtttgagacgatcatccaagattctaccttccgatgtg |
200 |
Q |
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| T |
10468147 |
ttaacaaagtaaaaatctcaatcaaagaaaggtatttattacaaagaaatgtaccttgttgagtttgagacgatcatccaagattctaccttccgatgtg |
10468246 |
T |
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| Q |
201 |
aagagaaagccttcagccattttgtatagcaagtgatcgtaccctctttcatccgcaaccaaaaattctctttccccaaaatctacatatgtagagattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10468247 |
aagagaaagccttcagccattttgtatagcaagtgatcgtaccctctttcatccgcaaccaaaaattctctttccccaaaatctacatatgtagagattg |
10468346 |
T |
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| Q |
301 |
gttccacttctgcttacagtttttaaaa-ctaattaatctccaattttggaacagagacaaaacatgtacac |
371 |
Q |
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| T |
10468347 |
gttccacttctgcttacagtttttaaaagctaattaatctccaattttggaacagagacaaaacatgtacac |
10468418 |
T |
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