View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4242_high_7 (Length: 370)
Name: NF4242_high_7
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4242_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 33596235 - 33595884
Alignment:
| Q |
1 |
cgtagaaacatagtaaaaccaataccaatattgcattgcctttagacatgtcctttgtaccatcaacaccactcgccaaagctagcaaagcagacaccgc |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| || || ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33596235 |
cgtagaaacatagtaaaaccaataccaatgttgcatttccctttgacatgtgctttgtaccatcaacaccagtcgccaaagctagcaaagcagacaccgc |
33596136 |
T |
|
| Q |
101 |
aatctttcaaagtgtcaacgcaaattataattattagtaccaataccacaggtataatgactagatggataaattaaaataaggacgaaaatttaaagac |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
33596135 |
gatctttcaaagtgtcaacacaaattataattattagtaccaataacacgggtataacgactagacggagaaattaaaataaggacgaaaatttagagac |
33596036 |
T |
|
| Q |
201 |
ggaaaaagcattagtaccacaatctttctgaagttatttcannnnnnnagtagttgaaagtatgaaaaacctagaacaataaataaatataaataatatt |
300 |
Q |
| |
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|||||||||||||||||| ||| ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
33596035 |
ggaaaaagcattagtaccgcaacctttctgcagttatttcatttttttagtagttgagagtatgaaaatactagaacaataaataaatataaataatatt |
33595936 |
T |
|
| Q |
301 |
atacacatatggttgcttaatttgcttaccagacagacaagcattagaatgc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33595935 |
atacacatatggttgcttaatttgcttaccagacagacaagcaatagaatgc |
33595884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 33603366 - 33603015
Alignment:
| Q |
1 |
cgtagaaacatagtaaaaccaataccaatattgcattgcctttagacatgtcctttgtaccatcaacaccactcgccaaagctagcaaagcagacaccgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || || ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
33603366 |
cgtagaaacatagtaaaaccaataccaatgttgcatttccctttgacatgtgctttgtaccatcaacaccagtcgccaaagctagcaaagcagacaccgc |
33603267 |
T |
|
| Q |
101 |
aatctttcaaagtgtcaacgcaaattataattattagtaccaataccacaggtataatgactagatggataaattaaaataaggacgaaaatttaaagac |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||||||||| |||| |
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|
| T |
33603266 |
gatctttcaaagtgtcaacacaaattataattattagtaccaataacacgggtataacgactagacggagaaattaaaataaggacgaaaatttagagac |
33603167 |
T |
|
| Q |
201 |
ggaaaaagcattagtaccacaatctttctgaagttatttcannnnnnnagtagttgaaagtatgaaaaacctagaacaataaataaatataaataatatt |
300 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
33603166 |
ggaaaaagcattagtaccgcaacctttctgcagttatttcatttttttagtagttgagagtatgaaaatactagaacaataaataaatataaataatatt |
33603067 |
T |
|
| Q |
301 |
atacacatatggttgcttaatttgcttaccagacagacaagcattagaatgc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33603066 |
atacacatatggttgcttaatttgcttaccagacagacaagcaatagaatgc |
33603015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 33589063 - 33588712
Alignment:
| Q |
1 |
cgtagaaacatagtaaaaccaataccaatattgcattgcctttagacatgtcctttgtaccatcaacaccactcgccaaagctagcaaagcagacaccgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33589063 |
cgtagaaacatagtaaaaccaataccaatgttgcatttccctttgacatgtgctttgtaccatcaacaccagtcgccaaagctagcaaagcagacaccgt |
33588964 |
T |
|
| Q |
101 |
aatctttcaaagtgtcaacgcaaattataattattagtaccaataccacaggtataatgactagatggataaattaaaataaggacgaaaatttaaagac |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
33588963 |
gatctttcaaagtgtcaacacaaattataattattagtaccaataacactggtataacgactagacggagaaattaaaataaggacgaaaatttagagac |
33588864 |
T |
|
| Q |
201 |
ggaaaaagcattagtaccacaatctttctgaagttatttcannnnnnnagtagttgaaagtatgaaaaacctagaacaataaataaatataaataatatt |
300 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33588863 |
ggaaaaagcattagtaccgcaacctttctgcagttatttcatttttttagtagttgagagtatgaaaatactagaacaataaataaatataaataatatt |
33588764 |
T |
|
| Q |
301 |
atacacatatggttgcttaatttgcttaccagacagacaagcattagaatgc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33588763 |
atacacatatggttgcttaatttgcttaccagacagacaagcaatagaatgc |
33588712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 33618927 - 33618874
Alignment:
| Q |
18 |
accaataccaatattgcattgcctttagacatgtcctttgtaccatcaacacca |
71 |
Q |
| |
|
|||||||||| |||||||||||| || || |||||||||||||||||||||||| |
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|
| T |
33618927 |
accaataccactattgcattgcccttggatatgtcctttgtaccatcaacacca |
33618874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 33628130 - 33628077
Alignment:
| Q |
18 |
accaataccaatattgcattgcctttagacatgtcctttgtaccatcaacacca |
71 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| |||||||||||||||||| |
|
|
| T |
33628130 |
accaataccaatattgcattgccctttgatatgtcatttgtaccatcaacacca |
33628077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 33623757 - 33623690
Alignment:
| Q |
4 |
agaaacatagtaaaaccaataccaatattgcattgcctttagacatgtcctttgtaccatcaacacca |
71 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||| || || ||||| |||||||||||||||||| |
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|
| T |
33623757 |
agaaacatattagtaccaatatcaatattgcattgccctttgatatgtcatttgtaccatcaacacca |
33623690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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