View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4242_low_10 (Length: 359)
Name: NF4242_low_10
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4242_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 5570216 - 5570350
Alignment:
| Q |
1 |
tcctccctatgcatcaaattctcgtccctatttttcagctcattcacctctttgactgaataagagaaggaaaataagttctccaccatttgtgcaaagg |
100 |
Q |
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| T |
5570216 |
tcctgcctatgcaacaaattctcatcactatttttcagctcattcatctctttgactgaataagagaaggaaaataagttatccaccatttgtgcaaagg |
5570315 |
T |
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| Q |
101 |
tgtagcatttgtagtaaacagtttacaccagttat |
135 |
Q |
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| T |
5570316 |
tgtagcatttgtagtaaacagtttacaccagttat |
5570350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 5570363 - 5570404
Alignment:
| Q |
310 |
ggatttttcatcccccctactataaataagggatgatgatgt |
351 |
Q |
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| T |
5570363 |
ggatttttcatcccccctactataaataagggatgatgatgt |
5570404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 5585084 - 5585133
Alignment:
| Q |
73 |
aataagttctccaccatttgtgcaaaggtgtagcatttgtagtaaacagt |
122 |
Q |
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| T |
5585084 |
aataagtcatccaccatttgtgcaaaggtgtagcatttgtagtaaacagt |
5585133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 5571912 - 5571961
Alignment:
| Q |
31 |
tttttcagctcattcacctctttgactgaataagagaaggaaaataagtt |
80 |
Q |
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| T |
5571912 |
tttttcagttctttcatttctttgactgaataagagaaggtaaataagtt |
5571961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 5579557 - 5579601
Alignment:
| Q |
31 |
tttttcagctcattcacctctttgactgaataagagaaggaaaat |
75 |
Q |
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| T |
5579557 |
tttttcagctcattcatctctttggctgactaagagaaggcaaat |
5579601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 27754705 - 27754768
Alignment:
| Q |
253 |
atatatgttggcagtgtcaaaggcattatccaacaaaggtcttcttgacacaactgtggatttt |
316 |
Q |
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| T |
27754705 |
atatatattggcagtgtcagaggcaatatccaataagggtcctcttgacacaactgtgtatttt |
27754768 |
T |
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