View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4242_low_11 (Length: 333)
Name: NF4242_low_11
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4242_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 5569966 - 5570265
Alignment:
| Q |
21 |
atggaaaatagaaaagtaaaagtctaggttgagttagatcacgacaatgtcattgcaacagaagtagccaattgacacctttataaaattgaacttgcta |
120 |
Q |
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| T |
5569966 |
atggaaaatagaaaagtaaaagtctaggttgagttagatcacaacaatgtctttgtaacagaagtagccaatagacacctttattaaattgaacttgcta |
5570065 |
T |
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| Q |
121 |
tgttattatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggactnnnnnnnngtccatgtttaatttttactctcttctttcacac |
220 |
Q |
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| T |
5570066 |
tgttattatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggactaaaaaaaagttcatgtttaatttttactctcttctttcacac |
5570165 |
T |
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| Q |
221 |
ctcacttggcatttggaaaacaattgcaacacacatgaaatgaaactcagtcctccctatgcaacaaattctcatcactatttttcagctcattcatctc |
320 |
Q |
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| T |
5570166 |
ctcacttggcatttggaaaacaattgcaacacacatgaaatgaaactcagtcctgcctatgcaacaaattctcatcactatttttcagctcattcatctc |
5570265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 5578626 - 5578684
Alignment:
| Q |
120 |
atgttattatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact |
178 |
Q |
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| T |
5578626 |
atgttattatataggacaactctacgtatgttatgtttctttgcaagcaatgtgggact |
5578684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 12066763 - 12066711
Alignment:
| Q |
126 |
ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact |
178 |
Q |
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| T |
12066763 |
ttatatagaacaacttcacatgtgttatgtttctttggtagcaatgtgggact |
12066711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 12075728 - 12075678
Alignment:
| Q |
126 |
ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact |
178 |
Q |
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| T |
12075728 |
ttatatagaacaacttcacgtat--tatgtttctttgctagcaatatgggact |
12075678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 5579537 - 5579576
Alignment:
| Q |
280 |
tgcaacaaattctcatcactatttttcagctcattcatctc |
320 |
Q |
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| T |
5579537 |
tgcaacaatttctcatcact-tttttcagctcattcatctc |
5579576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 12047045 - 12046993
Alignment:
| Q |
126 |
ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact |
178 |
Q |
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||||||| ||||||||| | | |||||| |||||||||| ||||||||||||| |
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| T |
12047045 |
ttatatataacaacttcacatgtgttatttttctttgctagcaatgtgggact |
12046993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 12058675 - 12058623
Alignment:
| Q |
126 |
ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact |
178 |
Q |
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||||||| ||||||||| | | ||||||||||||||||| ||||| ||||||| |
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| T |
12058675 |
ttatatataacaacttcacatgtgttatgtttctttgctagcaatatgggact |
12058623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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