View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4242_low_12 (Length: 240)
Name: NF4242_low_12
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4242_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 55208050 - 55208275
Alignment:
| Q |
1 |
cttggaaatctaaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgcatg |
100 |
Q |
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| T |
55208050 |
cttggaaatctaaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgca-g |
55208148 |
T |
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| Q |
101 |
tggtttattgtttggtgtttaccgcgttccacacactcctc-ttaaagctcacactacactataaattaggaagaaaatcatatttccatttcag-tact |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
55208149 |
tggtttattgtttggtgtttaccgcgttccacacactcctctttaaagctcacactacactataaattaggaacaaaatcatatttccatttcagttact |
55208248 |
T |
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| Q |
199 |
cctatttttcttcattcaaaatcatgt |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55208249 |
cctatttttcttcattcaaaatcatgt |
55208275 |
T |
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