View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4242_low_17 (Length: 204)
Name: NF4242_low_17
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4242_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 44160571 - 44160385
Alignment:
| Q |
1 |
tctagcctcgatgtggacggtccctgaaagctcccctccctgacccaagacaatgctattttgttttcgaattttcaacttacgtaagcaattgcaattt |
100 |
Q |
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|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44160571 |
tctagcctcgatgtggacggtcccccaaagctcc--ttagtgacccaagacaatgctattttgttttagaattttcaacttacgtaagcaattgcaattt |
44160474 |
T |
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| Q |
101 |
ttattgaggattggttgttggaatggaaatcatcattgacctcaaaatttaagttgttatgctaaaagattgtagtgaataatatattt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44160473 |
ttattgaggattggttgttggaatggaaatcatcattgacctcaaaatttaagttgttatgctaaaagattgtagtgaataatatattt |
44160385 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22028391 - 22028344
Alignment:
| Q |
1 |
tctagcctcgatgtggacggtccctgaaagctcccctccctgacccaa |
48 |
Q |
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||||||||| |||||||||||||| |||||||||||| ||||||||| |
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| T |
22028391 |
tctagcctcaatgtggacggtcccccaaagctcccctcactgacccaa |
22028344 |
T |
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