View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4242_low_3 (Length: 509)
Name: NF4242_low_3
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4242_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 25 - 487
Target Start/End: Original strand, 12813220 - 12813680
Alignment:
| Q |
25 |
catcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaataaccatatgcatttaaacattattaggtctt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
12813220 |
catcatcatcttcatagttcatcaacccttcaaaataaaagtcatcctatgtgcctcttcaaaattaagaaccatatgcatttaaacattactaggtctt |
12813319 |
T |
|
| Q |
125 |
caaattagagaaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaaatat |
224 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12813320 |
caaattagagaagaattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagtttcaaatat |
12813419 |
T |
|
| Q |
225 |
cattatctctttctttgaaacccataaatcatctctatcattgtttgaattgnnnnnnnnngaaagaggaagagtaagattggtgattagtttcgtttga |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12813420 |
cattatctctttctttgaaacccataaatcatctctatcactgtttgaattg--aaacaaagaaagaggaagagtaagattggtgattagtttcgtttga |
12813517 |
T |
|
| Q |
325 |
gggtttgacagatgattgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttct |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813518 |
gggtttgacagatgattgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttct |
12813617 |
T |
|
| Q |
425 |
tgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattgac |
487 |
Q |
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|
| T |
12813618 |
tgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattgac |
12813680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 22418056 - 22418305
Alignment:
| Q |
21 |
acatcatcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaataaccatatgcatttaaacattattagg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
22418056 |
acatcatcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaagaaccatatgcatttaaacattactagg |
22418155 |
T |
|
| Q |
121 |
tcttcaaattagagaaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaa |
220 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22418156 |
tcttcaaattagagtaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaa |
22418255 |
T |
|
| Q |
221 |
atatcattatctctttctttgaaacccataaatcatctctatcattgttt |
270 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
22418256 |
atatcattatctctttctttgaaacccatatatcatctctatcattgttt |
22418305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 410 - 484
Target Start/End: Original strand, 22418304 - 22418378
Alignment:
| Q |
410 |
ttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaatt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22418304 |
ttcctcaactcttcttgtaggccatcactagtaagccacccacgaaacacaccacgatccaacaaatacgcaatt |
22418378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 367 - 484
Target Start/End: Original strand, 30621994 - 30622111
Alignment:
| Q |
367 |
aagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacga |
466 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
30621994 |
aagagaatgatcgtacattccaataacctcgtgaagagccaacttcctcaactcctcttgtgggccatcaccagtaagccacccacgaaaaacaccacga |
30622093 |
T |
|
| Q |
467 |
tccaacaaatacacaatt |
484 |
Q |
| |
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|||||||||||| ||||| |
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| T |
30622094 |
tccaacaaatacgcaatt |
30622111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 14998348 - 14998449
Alignment:
| Q |
175 |
ttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaaatatcattatctctttctttgaaacccataaatcatctctatcattgtttgaat |
274 |
Q |
| |
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||||||| |||| ||||| || ||| || |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| |
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| T |
14998348 |
ttctttcaaatctttctcatgtatctacaaaattgaaaagcttaaaatatcattatctctttctttcaaacccagaaatcatctttatcactgtttgaat |
14998447 |
T |
|
| Q |
275 |
tg |
276 |
Q |
| |
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|| |
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|
| T |
14998448 |
tg |
14998449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 14998276 - 14998326
Alignment:
| Q |
26 |
atcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgt |
76 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
14998276 |
atcatcatcttcataattcataaacccttcaaaataaaaatcatcttatgt |
14998326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 48292701 - 48292638
Alignment:
| Q |
294 |
aagagtaagattggtgattagtttcgtttgagggtttgacagatgattgcaaaagtggttttct |
357 |
Q |
| |
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|||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||| |
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| T |
48292701 |
aagagtgagaatggtgattagttacgtttgagggtttgacagatgagagcaaaagtggctttct |
48292638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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