View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4242_low_4 (Length: 501)

Name: NF4242_low_4
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4242_low_4
NF4242_low_4
[»] chr1 (9 HSPs)
chr1 (19-495)||(28495756-28496232)
chr1 (368-495)||(36989340-36989467)
chr1 (369-495)||(12804511-12804637)
chr1 (369-495)||(42287117-42287243)
chr1 (369-495)||(4160377-4160503)
chr1 (369-495)||(12774937-12775063)
chr1 (82-141)||(31641897-31641956)
chr1 (369-495)||(50788819-50788945)
chr1 (367-495)||(31644056-31644184)
[»] chr8 (4 HSPs)
chr8 (369-495)||(5788723-5788849)
chr8 (81-145)||(5787996-5788060)
chr8 (429-495)||(33186735-33186801)
chr8 (84-139)||(33186981-33187036)
[»] chr7 (2 HSPs)
chr7 (369-493)||(40749392-40749516)
chr7 (387-495)||(44150818-44150926)
[»] chr2 (3 HSPs)
chr2 (366-495)||(42898298-42898427)
chr2 (367-495)||(40040789-40040917)
chr2 (369-495)||(38895857-38895983)
[»] chr4 (2 HSPs)
chr4 (367-495)||(22085504-22085632)
chr4 (369-495)||(30518148-30518274)


Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 28495756 - 28496232
Alignment:
Q  19 attcatcatagcactaccttcttcattcttaaaatttagatttgttgttgtaactgaagttactcttgcactctcttctgccaatgcatcacaaaaggct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495756 attcatcatagcactaccttcttcattcttaaaatttagatttgttgttgtaactgaagttactcttgcactctcttctgccaatgcatcacaaaaggct 28495855  T
Q  119 ctatgtgtaatgaaactatcctttctgttcaaaatatcaacactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495856 ctatgtgtaatgaaactatcctttctgttcaaaatatcaacactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaa 28495955  T
Q  219 agcattaaattcaaaacctaacactacatacatgattggaaaaacctcgtacatgtcacaaatatgaatatgaataaattatagaagcatttattgattt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28495956 agcattaaattcaaaacctaacactacatacatgattggaaaaacctcgtacatgtcacaaatatgaatatgaataaattaaagaagcatttattgattt 28496055  T
Q  319 atcacagaaacaaaagattggtgaataaaaggagagtatattaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccaca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496056 atcacagaaacaaaagattggtgaataaaaggagagtatattaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccaca 28496155  T
Q  419 tgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctcac 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496156 tgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctcac 28496232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 495
Target Start/End: Complemental strand, 36989467 - 36989340
Alignment:
Q  368 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 467  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  468 catttttcacatttccacttcttctcac 495  Q
    || || |||||||||||||| |||||||    
T  36989367 cacttatcacatttccactttttctcac 36989340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 12804511 - 12804637
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    |||||||||||||| ||||||||||||||| | || || || |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  469 atttttcacatttccacttcttctcac 495  Q
    | ||||||||||||||||| |||||||    
T  12804611 acttttcacatttccactttttctcac 12804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 42287243 - 42287117
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| |||||||| |||||||| || |||||||| || || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  469 atttttcacatttccacttcttctcac 495  Q
    |||||||||||||||||||||||||||    
T  42287143 atttttcacatttccacttcttctcac 42287117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 4160503 - 4160377
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  469 atttttcacatttccacttcttctcac 495  Q
    |||| ||||| ||||||||||||||||    
T  4160403 atttctcacacttccacttcttctcac 4160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 12775063 - 12774937
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| ||||| | ||||||||||||||||||||| || ||||| || || ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  469 atttttcacatttccacttcttctcac 495  Q
    | |||||||| ||||| || |||||||    
T  12774963 acttttcacacttccattttttctcac 12774937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 31641897 - 31641956
Alignment:
Q  82 tcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctt 141  Q
    ||||||||| ||||| ||||||||||||||||| |||||||| || ||||| ||||||||    
T  31641897 tcttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaagctatcctt 31641956  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 50788819 - 50788945
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    ||||| |||||||| ||||||||||||||  | |||||||| || ||||| || || | ||| || |||||||||||||| || ||||| || || || |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  469 atttttcacatttccacttcttctcac 495  Q
    | || ||||| ||||| ||||||||||    
T  50788919 acttatcacacttccatttcttctcac 50788945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 495
Target Start/End: Original strand, 31644056 - 31644184
Alignment:
Q  367 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 466  Q
    ||||||| || || ||||| ||||| |||||||| |||||||  |||||||| ||||| |  ||||||||||||||||| || || |||||  | || ||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttga 31644155  T
Q  467 acatttttcacatttccacttcttctcac 495  Q
     || || ||||||||||| || |||||||    
T  31644156 gcacttatcacatttccattttttctcac 31644184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 5788723 - 5788849
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    ||||||||||||||||| |||||||||||| | |||||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||| || ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  469 atttttcacatttccacttcttctcac 495  Q
    | |||||||||||||||||||||||||    
T  5788823 acttttcacatttccacttcttctcac 5788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 5787996 - 5788060
Alignment:
Q  81 ctcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctg 145  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |||||    
T  5787996 ctcttgcactctcttctgctaatgcatcacaaaatgctctatgtgttatgaaactgtcccttctg 5788060  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 429 - 495
Target Start/End: Complemental strand, 33186801 - 33186735
Alignment:
Q  429 tgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctcac 495  Q
    |||||||||||||||||||| || |||||||| || |||||||| |||||||||||||| |||||||    
T  33186801 tgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactttttctcac 33186735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 33187036 - 33186981
Alignment:
Q  84 ttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcc 139  Q
    ||||| |||| |||||||| ||||||||||| ||||||||||| || |||||||||    
T  33187036 ttgcattctcctctgccaacgcatcacaaaaagctctatgtgtgataaaactatcc 33186981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 369 - 493
Target Start/End: Complemental strand, 40749516 - 40749392
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  469 atttttcacatttccacttcttctc 493  Q
    | || ||||| ||||| ||||||||    
T  40749416 acttatcacacttccatttcttctc 40749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 495
Target Start/End: Original strand, 44150818 - 44150926
Alignment:
Q  387 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 486  Q
    ||||| |||||||||||||| || |||||||| |||||    ||||| |||||||| ||||| || |||||| |||| || || || ||||||||||| |    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  487 tcttctcac 495  Q
    |||||||||    
T  44150918 tcttctcac 44150926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 366 - 495
Target Start/End: Complemental strand, 42898427 - 42898298
Alignment:
Q  366 ttataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgg 465  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || |    
T  42898427 ttataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttag 42898328  T
Q  466 aacatttttcacatttccacttcttctcac 495  Q
    | || || ||||||||||||||||||||||    
T  42898327 agcacttgtcacatttccacttcttctcac 42898298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 495
Target Start/End: Complemental strand, 40040917 - 40040789
Alignment:
Q  367 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 466  Q
    ||||||| ||||| || |||||||| |||||| |||| ||| | || |||||  | ||  ||||||| |||||||||||||| ||||||||||| || ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  467 acatttttcacatttccacttcttctcac 495  Q
    ||| || ||||| ||||||||||||||||    
T  40040817 acacttatcacacttccacttcttctcac 40040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 38895857 - 38895983
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 38895956  T
Q  469 atttttcacatttccacttcttctcac 495  Q
    | || ||||| ||||||||||||||||    
T  38895957 acttctcacacttccacttcttctcac 38895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 367 - 495
Target Start/End: Original strand, 22085504 - 22085632
Alignment:
Q  367 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 466  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  22085504 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 22085603  T
Q  467 acatttttcacatttccacttcttctcac 495  Q
    ||| |||||||| ||||||||||||||||    
T  22085604 acacttttcacacttccacttcttctcac 22085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 30518148 - 30518274
Alignment:
Q  369 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 468  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| || || || |||||   ||| || |    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 30518247  T
Q  469 atttttcacatttccacttcttctcac 495  Q
    | || ||||| ||||||||||| ||||    
T  30518248 acttctcacacttccacttcttttcac 30518274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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