View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4242_low_6 (Length: 426)
Name: NF4242_low_6
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4242_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 21 - 415
Target Start/End: Complemental strand, 36753560 - 36753166
Alignment:
| Q |
21 |
gtccctgccaaagcagaaaggaaagcagcctgagccatgataggattgctagcatcattaagaggtgtgagacacattctcttactagatttacccgacc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753560 |
gtccctgccaaagcagaaaggaaagcagcctgagccatgataggattgatagcatcattaagaggtgtgagacacattctcttactagatttacccgacc |
36753461 |
T |
|
| Q |
121 |
caacaatttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctacc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753460 |
caacaatttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctacc |
36753361 |
T |
|
| Q |
221 |
aacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcc |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36753360 |
aacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcattttttgtctcc |
36753261 |
T |
|
| Q |
321 |
tcacttatctccactctcttaaattttgtattactcatgccaattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattctt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36753260 |
tcacttatctccactctcttaaattttgtattactcataccaattcgatagttcccacgaatgaaacacctcgcacacaacttcctattattctt |
36753166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 127 - 415
Target Start/End: Complemental strand, 19123788 - 19123500
Alignment:
| Q |
127 |
tttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
226 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123788 |
tttcggattcacattcagcatcaacgggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
19123689 |
T |
|
| Q |
227 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcactt |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |
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| T |
19123688 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattctttttttgtctcctcgctt |
19123589 |
T |
|
| Q |
327 |
atctccactctcttaaattttgtattactcatgccaattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattctt |
415 |
Q |
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|||||||||||||| |||| |||||||||||| |||||||||||||| |||| ||| ||||||||| ||||||||||| |||||||||| |
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| T |
19123588 |
atctccactctcttgaattctgtattactcataccaattcgatagtttccacaaataaaacacctcacacacaacgtcatattattctt |
19123500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 162 - 414
Target Start/End: Original strand, 54292881 - 54293133
Alignment:
| Q |
162 |
aactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaat |
261 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
54292881 |
aactgatcaccaaaaggaagctctaaaaaacgagcaacgcattccttgtcggtcctaccaacaacttgatgagcaaccctcttccaatcatcaccgaaat |
54292980 |
T |
|
| Q |
262 |
ttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcacttatctccactctcttaaattttgtattactcatgcc |
361 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||| || |
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| T |
54292981 |
tcgtaatagcttcaagaagattcagtgtttccttctcagtccattcatttttcgtctcctcgcttatctccactctcttgaattctgtattactcatacc |
54293080 |
T |
|
| Q |
362 |
aattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattct |
414 |
Q |
| |
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||||||||| || |||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
54293081 |
aattcgataatttccacgaataaaacacctcgcacacaacgtcatattattct |
54293133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 54292711 - 54292831
Alignment:
| Q |
49 |
cctgagccatgataggattgctagcatcattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttcggattcccattcagcatc |
148 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||| | |
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| T |
54292711 |
cctgagccatgataggattgctagcatccgcaagaggtgtgagacacattctcttactagatttatccgacggaacagtttcggattcacattcagcagc |
54292810 |
T |
|
| Q |
149 |
aacgggaggcttcaactgatc |
169 |
Q |
| |
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||||||||||||||||||||| |
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| T |
54292811 |
aacgggaggcttcaactgatc |
54292831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 54292376 - 54292407
Alignment:
| Q |
21 |
gtccctgccaaagcagaaaggaaagcagcctg |
52 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
54292376 |
gtccctgccaaagcagaaaggaaagcagcctg |
54292407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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