View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4242_low_7 (Length: 411)
Name: NF4242_low_7
Description: NF4242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4242_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 34820184 - 34820571
Alignment:
| Q |
1 |
ttgatggtcaacctcagcttccaaagtcacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagcttcgtct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34820184 |
ttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctttgtct |
34820283 |
T |
|
| Q |
101 |
gatttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820284 |
gatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactat |
34820383 |
T |
|
| Q |
201 |
tattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctc |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820384 |
tattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctc |
34820483 |
T |
|
| Q |
301 |
gtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgac |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820484 |
gtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgac |
34820571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 34820301 - 34820690
Alignment:
| Q |
1 |
ttgatggtcaacctcagcttccaaagtcacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagcttcgtct |
100 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||| ||||||||| ||| |
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| T |
34820301 |
ttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatct |
34820400 |
T |
|
| Q |
101 |
gatttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactat |
200 |
Q |
| |
|
||||| | || ||||| |||||||||||| |||||| ||| |||||||||| ||||||| |||||||||| ||| ||||||||||||||||| | ||| |
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|
| T |
34820401 |
gatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatat |
34820500 |
T |
|
| Q |
201 |
tattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctc |
300 |
Q |
| |
|
|||||| ||||||||||||||| || || |||||||||||||||| |||||||| |||||||||||| || |||| |||||| |||| ||| ||| || |
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| T |
34820501 |
tatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttc |
34820600 |
T |
|
| Q |
301 |
gtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgt |
390 |
Q |
| |
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||||||||||||| |||||||||||||||||||| | ||||| ||| | |||||||||| || |||| |||||||| ||||||| ||||| |
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|
| T |
34820601 |
gtcaacaaaactactattatttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgt |
34820690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 2 - 383
Target Start/End: Original strand, 34820419 - 34820800
Alignment:
| Q |
2 |
tgatggtcaacctcagcttccaaagtcacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagcttcgtctg |
101 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||| |||||||||| ||||||| ||| |||||||||||||||||| |||||| || |||||| |||| |
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|
| T |
34820419 |
tgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttagcttcatctg |
34820518 |
T |
|
| Q |
102 |
atttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactatt |
201 |
Q |
| |
|
||||| |||||||||| |||||||||| | ||||||| ||| ||||||| ||| |||| | |||| |||| |||||||| ||||||||||||| |||||| |
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|
| T |
34820519 |
atttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaactactatt |
34820618 |
T |
|
| Q |
202 |
attttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcg |
301 |
Q |
| |
|
||||| |||||||||| | || || || | |||||||||| ||||||| ||| |||| |||||||||| ||||||| |||||||||| ||| ||||||| |
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|
| T |
34820619 |
atttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcg |
34820718 |
T |
|
| Q |
302 |
tcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacct |
383 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||| || |||||||||||| |||||| |
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|
| T |
34820719 |
tcaacaaaactactattattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacct |
34820800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 34820536 - 34820878
Alignment:
| Q |
2 |
tgatggtcaacctcagcttccaaagtcacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagcttcgtctg |
101 |
Q |
| |
|
|||||||||| |||| |||||||| |||||| ||| |||| |||| | |||| ||||| || |||||||||||||||||||||| || |||||| ||| |
|
|
| T |
34820536 |
tgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaactactattatttttagcttcatcta |
34820635 |
T |
|
| Q |
102 |
atttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactatt |
201 |
Q |
| |
|
| ||| | ||| | || ||||||| |||| || |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34820636 |
agttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaactactatt |
34820735 |
T |
|
| Q |
202 |
attttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcg |
301 |
Q |
| |
|
|||||||||||||||| |||| || || |||||||||||| ||| ||||||| |||| |||||| || ||||||||||||||||| ||| ||||||| |
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|
| T |
34820736 |
attttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcg |
34820835 |
T |
|
| Q |
302 |
tcaacaaaactaatattatttttagcttcatctgatttgtcgt |
344 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | ||||||| |
|
|
| T |
34820836 |
tcaacaaaactactattatttccagcttcatctaacttgtcgt |
34820878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 113 - 384
Target Start/End: Original strand, 34820179 - 34820450
Alignment:
| Q |
113 |
gcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagctt |
212 |
Q |
| |
|
|||||||||||||||||| || |||| |||| ||||| ||||||||||| || |||||||||||| |||||||||||||||| |||||||| |||||||| |
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|
| T |
34820179 |
gcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctt |
34820278 |
T |
|
| Q |
213 |
catctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
312 |
Q |
| |
|
|||||||| || || ||||| |||||||||||| |||||| |||| |||||||||| ||||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
34820279 |
tgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaaca |
34820378 |
T |
|
| Q |
313 |
aatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctc |
384 |
Q |
| |
|
| ||||||||| ||||||||||||||| || || |||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
34820379 |
actattattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctc |
34820450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 227 - 390
Target Start/End: Original strand, 34820176 - 34820339
Alignment:
| Q |
227 |
tcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttag |
326 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||| ||||| ||| |||||||||| ||||||| ||| |||||||||||||||||| |||||| || || |
|
|
| T |
34820176 |
tcagcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcag |
34820275 |
T |
|
| Q |
327 |
cttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgt |
390 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| | ||||||||||| ||||||| ||||| |
|
|
| T |
34820276 |
ctttgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgt |
34820339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 34819904 - 34819985
Alignment:
| Q |
231 |
cgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
312 |
Q |
| |
|
|||| |||||||||| || | ||| |||||||||| | | |||||| |||||||||| ||| |||||||||||||||||| |
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|
| T |
34819904 |
cgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatactctcgtcaacaaaact |
34819985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 34819908 - 34819985
Alignment:
| Q |
1 |
ttgatggtcaacctcagcttccaaagtcacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaact |
78 |
Q |
| |
|
||||||||||| || ||||| |||| |||| | |||||||| ||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
34819908 |
ttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatactctcgtcaacaaaact |
34819985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 34819943 - 34819984
Alignment:
| Q |
153 |
acgtaccaaaatcattttttgtgatactctcgtcaacaaaac |
194 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
34819943 |
acgtaccatcatcatttttggtgatactctcgtcaacaaaac |
34819984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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