View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4243_high_1 (Length: 452)
Name: NF4243_high_1
Description: NF4243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4243_high_1 |
 | |
|
| [»] scaffold0148 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0148 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Complemental strand, 26395 - 25964
Alignment:
| Q |
7 |
ggttttgggccagtttacaaggtgattgatttttccttctacctatcttcctggtcagactagattttaaattaagtaatgacctgttgagattatattt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26395 |
ggttttgggccagtttacaaggtgattgatttttccttctacctatcttcctggtcagactagattttaaattaagtaatgacctattgagattatattt |
26296 |
T |
|
| Q |
107 |
tagggtaagcttggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgcta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26295 |
tagggtaagcttggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgcta |
26196 |
T |
|
| Q |
207 |
aacttcaacatcgaaaccttgttaaattacgtggctactgcgtaaaaggagaggaaaaaattctgctttatgagtatatgcctaacaagagcctggactt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26195 |
aacttcaacatcgaaaccttgttaaattacggggctactgcgtaaaaggagaggaaaaaattctgctttatgagtatatgcctaacaagagcctggactt |
26096 |
T |
|
| Q |
307 |
aatgatattcggttggtcttaaattttatctatcatttgtggtgttttatgagtttccagtacattgattaatcctcgacattttatctatcattttttc |
406 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26095 |
aatgatattcggttggtctcaaattttatctatcatttgtggtgttttatgagtttcgagtacattgattaattctcgacattttatctatcattttttc |
25996 |
T |
|
| Q |
407 |
gcctttaaatggttaactaaacacattcacag |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25995 |
gcctttaaatggttaactaaacacattcacag |
25964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 203 - 379
Target Start/End: Complemental strand, 21918349 - 21918170
Alignment:
| Q |
203 |
gctaaacttcaacatcgaaaccttgttaaattacgtggctactgc---gtaaaaggagaggaaaaaattctgctttatgagtatatgcctaacaagagcc |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| || | |||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
21918349 |
gctaaacttcaacatcgtaaccttgttaaattacgcggctgctcctgtgtaaaaggagaggaaaaagttctgctttatgagtatatgcgtaacaagagct |
21918250 |
T |
|
| Q |
300 |
tggacttaatgatattcggttggtcttaaattttatctatcatttgtggtgttttatgagtttccagtacattgattaat |
379 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
21918249 |
tggacttattgatattcggttggtctctaattttatctatcatttgtggtgttttctgcgtttggagtacattgattaat |
21918170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 21925522 - 21925330
Alignment:
| Q |
7 |
ggttttgggccagtttacaaggtgattgatttttccttctacctatcttcctggtcagactagattttaaattaagtaatgacct-gttgagattatatt |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| |||||| ||| | |||||||| || |||| ||||| | | || | |||| | | |
|
|
| T |
21925522 |
ggttttggaccagtttacaaggtgattgatttt-ccttctatttatcttttctgtcggtctagatttcaagttaaataatggcttcgtggggatttt--t |
21925426 |
T |
|
| Q |
106 |
ttagggtaagcttggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgat |
201 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||| | || |||||| |||||||||||||||||||| |
|
|
| T |
21925425 |
ttagggtaaatttggtggtcaagaaattgcgataaagagactctcaagtgtttcatcacaaggttcactggaattcaagaatgaggttgttttgat |
21925330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 21935984 - 21936088
Alignment:
| Q |
119 |
ggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaacatc |
218 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| | ||| |||||| | |||| ||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
21935984 |
ggtggacaagaaattgcagtaaaaagactttcaagttgttctggacaaggtatggaggagtttaagaatgaagttgttttgatcgcgaaacttcaacatc |
21936083 |
T |
|
| Q |
219 |
gaaac |
223 |
Q |
| |
|
||||| |
|
|
| T |
21936084 |
gaaac |
21936088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 304
Target Start/End: Complemental strand, 37714322 - 37714140
Alignment:
| Q |
122 |
ggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaacatcgaa |
221 |
Q |
| |
|
|||||||| ||||| | ||||| ||||| | ||||||| | |||||||| || |||||||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
37714322 |
ggtcaagagattgctatcaagaggctttcgagtgtttcaactcaaggcttgcaagaatttaaaaatgagattgttttgattgccaaacttcaacatcgaa |
37714223 |
T |
|
| Q |
222 |
accttgttaaattacgtggctactgcgtaaaaggagaggaaaaaattctgctttatgagtatatgcctaacaagagcctggac |
304 |
Q |
| |
|
| ||||||| | | ||||| ||| | |||||||| |||||||| || || ||||| || ||| | ||||||||| ||||| |
|
|
| T |
37714222 |
atcttgttaggcttaggggctattgcattaaaggagacgaaaaaatcctactgtatgaatacatgtcaaacaagagcttggac |
37714140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 36438241 - 36438153
Alignment:
| Q |
128 |
gaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaaca |
216 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||| || | || ||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
36438241 |
gaaattgcagtaaagagactgtcaaagcattccggacaaggcatagaagagtttaaaaatgaggttgttttgatttcaaaacttcaaca |
36438153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University