View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4243_high_2 (Length: 418)

Name: NF4243_high_2
Description: NF4243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4243_high_2
NF4243_high_2
[»] chr4 (4 HSPs)
chr4 (12-192)||(34344082-34344263)
chr4 (239-401)||(34344310-34344466)
chr4 (278-328)||(18912951-18913001)
chr4 (71-138)||(18913128-18913195)
[»] chr6 (2 HSPs)
chr6 (19-192)||(3017805-3017979)
chr6 (244-398)||(3018023-3018171)
[»] chr5 (2 HSPs)
chr5 (12-139)||(37278612-37278739)
chr5 (246-399)||(37278365-37278512)
[»] chr7 (3 HSPs)
chr7 (12-114)||(46420229-46420331)
chr7 (249-315)||(46420089-46420155)
chr7 (332-401)||(46420029-46420098)
[»] scaffold0179 (1 HSPs)
scaffold0179 (251-297)||(11387-11433)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 34344082 - 34344263
Alignment:
Q  12 aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggacattggagagataacaagtgataaaataaaatgttgaaatgtg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||    
T  34344082 aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttctaatgtg 34344181  T
Q  112 tgtatttgtatggtccaccaaatcaatgaatcc-nnnnnnnntgaaggaaagataacgtgtgtggtgggtacttgtttcaat 192  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||| |||| || ||||||||||    
T  34344182 tgtatttgtatggtccaccaaatcaatgaatccaaaaaaaaatgaaggaaagataacgtgtgttgtggatatttgtttcaat 34344263  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 401
Target Start/End: Original strand, 34344310 - 34344466
Alignment:
Q  239 ggtctgtactctctgccactcccatgtgctcatgtctcaatttaaatttcaattttcccgcttgcaatttgccaggggttgtttcattttcattttgcca 338  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||      |||||||||||||    
T  34344310 ggtctgtactctctgccacttccatctgctcttgtctcaatttaaatttcaactttcccgcttgcaatttgcccggggttg------tttcattttgcca 34344403  T
Q  339 gggtcaaacccctgtttcacgtgaacagtgtcccactttttctgaagtcattttcccagggac 401  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  34344404 gggttaaacccctgttttacgtgaacagtgtcccacttttcctgaagtcattttcccagggac 34344466  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 18913001 - 18912951
Alignment:
Q  278 atttaaatttcaattttcccgcttgcaatttgccaggggttgtttcatttt 328  Q
    |||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  18913001 atttgaatttcaattttcccgcttgcaatttaccaggggttgtttcctttt 18912951  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 18913195 - 18913128
Alignment:
Q  71 ttggagagataacaagtgataaaataaaatgttgaaatgtgtgtatttgtatggtccaccaaatcaat 138  Q
    |||||||||||||||||| ||||| | || ||||  || |||||||||||| |||||||||| |||||    
T  18913195 ttggagagataacaagtggtaaaagataaggttgtgatatgtgtatttgtaaggtccaccaactcaat 18913128  T

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Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 3017805 - 3017979
Alignment:
Q  19 aagaaggaagaatggtaagctttatgagttttggacttgtgttctttggacattggagagataacaagtgataaaataaaatgttgaaatgtgtgtattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  3017805 aagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgtaatgtgtgtattt 3017904  T
Q  119 gtatggtccaccaaatcaatgaatc-cnnnnnnnntgaaggaaagataacgtgtgtggtgggtacttgtttcaat 192  Q
    |||||||||||||||||||||||||          |||||||||||||| |||||||||||||| ||||||||||    
T  3017905 gtatggtccaccaaatcaatgaatcaaaaaaaaaatgaaggaaagataatgtgtgtggtgggtatttgtttcaat 3017979  T

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Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 244 - 398
Target Start/End: Original strand, 3018023 - 3018171
Alignment:
Q  244 gtactctctgccactcccatgtgctcatgtctcaatttaaatttcaattttcccgcttgcaatttgccaggggttgtttcattttcattttgccagggtc 343  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      ||||||||||||||||||    
T  3018023 gtactctctgccactcccatgtgctcatgtctcaatttaagtttcaattttcccgcttgcaatttgccaggggttg------tttcattttgccagggtc 3018116  T
Q  344 aaacccctgtttcacgtgaacagtgtcccactttttctgaagtcattttcccagg 398  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  3018117 aaacccctgttttacatgaacagtgtcccactttttctgaagtcattttcccagg 3018171  T

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Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 37278739 - 37278612
Alignment:
Q  12 aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggacattggagagataacaagtgataaaataaaatgttgaaatgtg 111  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  37278739 aagaaggaaaaaggaagaatggcaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaagaaaatgttgtaatgtg 37278640  T
Q  112 tgtatttgtatggtccaccaaatcaatg 139  Q
    |||||||||||| |||||||||||||||    
T  37278639 tgtatttgtatgatccaccaaatcaatg 37278612  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 246 - 399
Target Start/End: Complemental strand, 37278512 - 37278365
Alignment:
Q  246 actctctgccactcccatgtgctcatgtctcaatttaaatttcaattttcccgcttgcaatttgccaggggttgtttcattttcattttgccagggtcaa 345  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  || |||||| || |||      |||| |||||||||||| ||    
T  37278512 actctctgccactcccatgtgctcttgtctctatttaaatttcaattttcccgcttataaattgccaaggattg------tttctttttgccagggttaa 37278419  T
Q  346 acccctgtttcacgtgaacagtgtcccactttttctgaagtcattttcccaggg 399  Q
    |||||||||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  37278418 acccctgttttacgtgaactgtgtctcactttttctgaagtcgttttcccaggg 37278365  T

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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 46420331 - 46420229
Alignment:
Q  12 aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggacattggagagataacaagtgataaaataaaatgttgaaatgtg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  46420331 aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgtaatgtg 46420232  T
Q  112 tgt 114  Q
    |||    
T  46420231 tgt 46420229  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 46420155 - 46420089
Alignment:
Q  249 ctctgccactcccatgtgctcatgtctcaatttaaatttcaattttcccgcttgcaatttgccaggg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46420155 ctctgccactcccatgtgctcatgtctcaatttaaatttcaatttttccgcttgcaatttgccaggg 46420089  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 401
Target Start/End: Complemental strand, 46420098 - 46420029
Alignment:
Q  332 tttgccagggtcaaacccctgtttcacgtgaacagtgtcccactttttctgaagtcattttcccagggac 401  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  46420098 tttgccagggtcaaacccctgttttacgtgaacagtgtcccacttttcctgaagtcattttcccagggac 46420029  T

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Target: scaffold0179 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 11433 - 11387
Alignment:
Q  251 ctgccactcccatgtgctcatgtctcaatttaaatttcaattttccc 297  Q
    ||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  11433 ctgccactttcatgtgctcttgtctccatttaaatttcaattttccc 11387  T

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