View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4243_low_3 (Length: 415)
Name: NF4243_low_3
Description: NF4243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4243_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 43408131 - 43407729
Alignment:
| Q |
1 |
attttttgagtgctataaaaaccctgccacaccctcacttcaaaatcatgtattttaattccaactacaacaactagttacacaacattgttcattccct |
100 |
Q |
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| T |
43408131 |
attttttgagtgctataaaaaccctgccacaccctcacttcaaaatcatgtattttaattccaactacaacaactagttacacaacattgttcattccct |
43408032 |
T |
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| Q |
101 |
tattttattctttctgtgtccattcagcttcttctaatcatcaatcatggacagaaacaattctcgcaggcaacttgctgcaatgaaacagtccctcttt |
200 |
Q |
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| T |
43408031 |
tattttattctttctgtgtccattcagcttcttctaatcatcaatcatggacagaaacaattctcgcaggcaacttgctgcaatgaaacagtccctcttt |
43407932 |
T |
|
| Q |
201 |
gatcaggtaggttccttaattgtcactttgctctcat-----ttttcttcttcttttcattgccaatcattagaaataccacatcaactcataatcacta |
295 |
Q |
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| T |
43407931 |
gatcaggtaggttccttaattgtcac-ttgctctcatttttcttttcttcttcttttcattgccaatcattagaaataccacatcaactcataatcacta |
43407833 |
T |
|
| Q |
296 |
attcaaatatgcactttcctaagttaccaaataataatatcatacgtgaatgtgtcttcattgaagggtacataactaatcaaatacttttggccatatg |
395 |
Q |
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| T |
43407832 |
attcaaatatgcactttcctaagttaccaaataataatatcatacgtgaatgtgtcttcattgatggctatctaactaatcaaatacttttggccatatg |
43407733 |
T |
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| Q |
396 |
cagg |
399 |
Q |
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| T |
43407732 |
cagg |
43407729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 43395799 - 43395678
Alignment:
| Q |
108 |
ttctttctgtgtccattcagcttcttct---aatcatcaatcatggacagaaacaattctcgcaggcaacttgctgcaatgaaacagtccctctttgatc |
204 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43395799 |
ttctttctgtgtcccttcagcttcttcttctaatcatcaatcatggacagaaacaattctcgcagacaacttgctgcaatgaaacagtccctctttgatc |
43395700 |
T |
|
| Q |
205 |
aggtaggttccttaattgtcac |
226 |
Q |
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| T |
43395699 |
aagtaggttccttaattttcac |
43395678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 43395560 - 43395511
Alignment:
| Q |
350 |
tcttcattgaagggtacataactaatcaaatacttttggccatatgcagg |
399 |
Q |
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| T |
43395560 |
tcttcattgatggctatctaactaatcaaatacttttggccatatgcagg |
43395511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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