View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4243_low_4 (Length: 396)
Name: NF4243_low_4
Description: NF4243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4243_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 2830352 - 2830715
Alignment:
| Q |
1 |
tattacatgtacgtggataacaaattcgaccatcaatcgtgtttcttgactatttaagtgttcattgtgcagaaaaactgcccgaaccgattaagctgcg |
100 |
Q |
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| T |
2830352 |
tattacatgtacgtgaataacaaattcgaccatcaatcgtgtttcttgactatttaagtgttcattgtgcagaaaaactgcccgaaccgattaagctgcg |
2830451 |
T |
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| Q |
101 |
agaggctgctgctaaagaagaagccaagttgagtgaatttcaggaagaattggtactaatggcagctactcttaatggggatcataaaaagagtatatat |
200 |
Q |
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| T |
2830452 |
agaggctgctgctaaagaagaagccaagttgagtgaatttcaggaagaattggtactaatggcagctactcttaatggggatcataaaaagagtatatat |
2830551 |
T |
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| Q |
201 |
cctgacaagttgatcgagaacatgtgtgtttcggacgcagttaaatatgccgaggatgcattcaatacatttttgaatgagtgtgagaaagcaaagcaaa |
300 |
Q |
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| T |
2830552 |
cctgacaagttgatcgagaacatgtgtgtttcggacgcagttaaatatgccgaggatgcattcaatacatttttgaatgagtgtgagaaagccaagcaaa |
2830651 |
T |
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| Q |
301 |
atggagctgatggatgtgatattgttgattgtgctaatacatgcagtaaactacccaattccaa |
364 |
Q |
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| T |
2830652 |
atggagctgatggatgtgatattgttgattgtgctaatacatgcagtaaactacccaattccaa |
2830715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 2789098 - 2789445
Alignment:
| Q |
1 |
tattacatgtacgtggataacaaattcgaccatcaatcgtgtttcttgactatttaagtgttcattgtgcagaaaaactgcccgaaccgattaagctgcg |
100 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2789098 |
tattacatgtacatgaataacaaattcgaccatcaatcgtgtttcttgactatttaagtattcattgtgcagaaaaactgcccgaaccgattaagctgcg |
2789197 |
T |
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| Q |
101 |
agaggctgctgctaaagaagaagccaagttgagtgaatttcaggaagaattggtactaatggcagctactcttaatggggatcataaaaagagtatatat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2789198 |
agaggccgctgctaaagaagaagccaagttgagtgaatttcaggaagaattggtactaatggcagctactcttaatggggatcatagaaagagtatatat |
2789297 |
T |
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| Q |
201 |
cctgacaagttgatcgagaacatgtgtgtttcggacgcagttaaatatgccgaggatgcattcaatacatttttgaatgagtgtgagaaagcaaagcaaa |
300 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2789298 |
cccaacaagttgatcgagaacatgtgtgttttggacgcagttaaatatgtcgaggttgcattcaatacattcttgaatgagtgtgagaaagcaaagcaaa |
2789397 |
T |
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| Q |
301 |
atggagctgatggatgtgatattgttgattgtgctaatacatgcagta |
348 |
Q |
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| T |
2789398 |
atggagctgatggatgtgatattgttgattgtgccaatacatgcagta |
2789445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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