View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4243_low_8 (Length: 290)

Name: NF4243_low_8
Description: NF4243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4243_low_8
NF4243_low_8
[»] chr1 (6 HSPs)
chr1 (60-274)||(49846534-49846748)
chr1 (1-42)||(18404439-18404480)
chr1 (1-39)||(40214988-40215026)
chr1 (1-42)||(16045825-16045866)
chr1 (1-41)||(19015402-19015442)
chr1 (1-41)||(25463674-25463714)
[»] chr3 (13 HSPs)
chr3 (1-44)||(2754712-2754755)
chr3 (1-42)||(11347265-11347306)
chr3 (1-42)||(37522050-37522091)
chr3 (1-41)||(3574554-3574594)
chr3 (1-44)||(6041879-6041922)
chr3 (1-44)||(34482937-34482980)
chr3 (1-44)||(37217080-37217123)
chr3 (1-40)||(42297352-42297391)
chr3 (1-39)||(3456064-3456102)
chr3 (1-39)||(48160905-48160943)
chr3 (1-41)||(3137441-3137481)
chr3 (1-41)||(24343545-24343585)
chr3 (1-41)||(33113791-33113831)
[»] chr8 (10 HSPs)
chr8 (1-43)||(1645992-1646034)
chr8 (1-43)||(32064741-32064783)
chr8 (1-41)||(15187558-15187598)
chr8 (1-43)||(17841877-17841919)
chr8 (1-39)||(24211580-24211618)
chr8 (1-39)||(32393858-32393896)
chr8 (1-39)||(34665382-34665420)
chr8 (1-42)||(40780156-40780197)
chr8 (1-46)||(42755069-42755114)
chr8 (1-41)||(26042143-26042183)
[»] chr5 (8 HSPs)
chr5 (1-42)||(2477633-2477674)
chr5 (1-41)||(6043538-6043578)
chr5 (1-40)||(3362777-3362816)
chr5 (1-40)||(38899753-38899792)
chr5 (1-39)||(11361158-11361196)
chr5 (1-39)||(12850801-12850839)
chr5 (1-42)||(4892199-4892240)
chr5 (1-41)||(14138666-14138706)
[»] chr4 (14 HSPs)
chr4 (1-42)||(10442816-10442857)
chr4 (1-45)||(4751440-4751484)
chr4 (1-40)||(31078846-31078885)
chr4 (1-40)||(33530715-33530754)
chr4 (1-39)||(2624837-2624875)
chr4 (1-43)||(21802349-21802391)
chr4 (1-39)||(22199261-22199299)
chr4 (1-39)||(36072947-36072985)
chr4 (1-39)||(49387915-49387953)
chr4 (1-38)||(7745139-7745176)
chr4 (1-42)||(24128236-24128277)
chr4 (1-42)||(24392664-24392705)
chr4 (1-42)||(47290063-47290104)
chr4 (1-45)||(23964492-23964536)
[»] chr2 (6 HSPs)
chr2 (2-43)||(9293604-9293645)
chr2 (1-40)||(35160756-35160795)
chr2 (1-39)||(21936081-21936119)
chr2 (1-38)||(10661888-10661925)
chr2 (1-42)||(13354843-13354884)
chr2 (1-41)||(23268089-23268129)
[»] chr7 (9 HSPs)
chr7 (1-41)||(15329271-15329311)
chr7 (1-41)||(45637710-45637750)
chr7 (1-40)||(15577877-15577916)
chr7 (1-39)||(3961979-3962017)
chr7 (1-39)||(4974762-4974800)
chr7 (1-39)||(24394972-24395010)
chr7 (1-39)||(42611811-42611849)
chr7 (1-39)||(48880954-48880992)
chr7 (1-41)||(37477107-37477147)
[»] chr6 (8 HSPs)
chr6 (1-41)||(6127273-6127313)
chr6 (1-41)||(23291111-23291151)
chr6 (1-41)||(28675146-28675186)
chr6 (1-40)||(33695354-33695393)
chr6 (1-40)||(33696695-33696734)
chr6 (1-39)||(17705492-17705530)
chr6 (1-42)||(18365600-18365641)
chr6 (1-42)||(18370864-18370905)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-39)||(11621-11659)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-43)||(41007-41049)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-42)||(12839-12880)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-42)||(4393-4434)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 60 - 274
Target Start/End: Original strand, 49846534 - 49846748
Alignment:
Q  60 catccaaaatcttattgaaattaaaggaggaaagatatttgcttctaatacaccccacatggttcggatgatttttcattcttctgtaatgcggtttgta 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49846534 catccaaaatcttattgaaattaaaggaggaaagatatttgcttctaatacaccccacatggttcggatgatttttcattcttctgtaatgcggtttgtg 49846633  T
Q  160 aacttgcagggtgttttgttnnnnnnnggaatctatgaatctattaaaagaagttgtgattgaaaagttctaattccttgtgacattgagcacatgagaa 259  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49846634 aacttgcagggtgttttgttaaaaaaaggaatctatgaatctattaaaagaagttgtgattgaaaagttctaattccttgtgacattgagcacatgagaa 49846733  T
Q  260 taaaatatagccaag 274  Q
    |||||||||||||||    
T  49846734 taaaatatagccaag 49846748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18404480 - 18404439
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  18404480 ttttcttgataaaatctttcttgatatatagcattgctcttt 18404439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40215026 - 40214988
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  40215026 ttttcttgataaaatctttcttgatatatagcattgctc 40214988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16045825 - 16045866
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  16045825 ttttcttgataaaatctttcttgatatatagcattactcttt 16045866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19015442 - 19015402
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  19015442 ttttcttgaaaaaatctttcttgatatatagcattgctctt 19015402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25463714 - 25463674
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  25463714 ttttcttcataaaatctttcttgatatatagcattgctctt 25463674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2754755 - 2754712
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttta 44  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  2754755 ttttcttgataaaatctttcttgatatatagcattgctctttta 2754712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11347306 - 11347265
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  11347306 ttttcttgataaaatctttcttgatatatagcattgctcttt 11347265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37522091 - 37522050
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  37522091 ttttcttgaaaaaatctttcttgatatatagtattgctcttt 37522050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3574554 - 3574594
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  3574554 ttttcttgataaaatctttcttgatatatagcattgctctt 3574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6041922 - 6041879
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttta 44  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||    
T  6041922 ttttcttgataaaatctttcttgatatatagcattgctcattta 6041879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34482937 - 34482980
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttta 44  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||    
T  34482937 ttttcttgaaaaaatctttcttgatatatagcattgctctttta 34482980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37217080 - 37217123
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttta 44  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||    
T  37217080 ttttcttgataaaatctttcttgatatatagcattgctcattta 37217123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42297391 - 42297352
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  42297391 ttttcttgataaaatctttcttgatatatagcattgctct 42297352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3456102 - 3456064
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  3456102 ttttcttgataaaatctttcttgatatatagcattgctc 3456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 48160943 - 48160905
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  48160943 ttttcttgataaaatctttcttgatatatagcattgctc 48160905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3137441 - 3137481
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  3137441 ttttcttgaaaaaatctttcttgatatatagcattgctctt 3137481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24343585 - 24343545
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||| | |||||| |||||||||    
T  24343585 ttttcttgataaaatctttcttaatatatagcattgctctt 24343545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33113831 - 33113791
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  33113831 ttttcttaataaaatctttcttgatatatagcattgctctt 33113791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1645992 - 1646034
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttt 43  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  1645992 ttttcttgataaaatctttcttgatatatagcattgctctttt 1646034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32064783 - 32064741
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttt 43  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  32064783 ttttcttgataaaatctttcttgatatatagcattgctctttt 32064741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15187598 - 15187558
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  15187598 ttttcttgataaaatctttcttgatatatagcattgctctt 15187558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17841877 - 17841919
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttt 43  Q
    ||||||||| |||||||||||||| |||||| |||||||||||    
T  17841877 ttttcttgaaaaaatctttcttgatatatagcattgctctttt 17841919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24211580 - 24211618
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  24211580 ttttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32393896 - 32393858
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  32393896 ttttcttgataaaatctttcttgatatatagcattgctc 32393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34665420 - 34665382
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  34665420 ttttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40780156 - 40780197
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  40780156 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 40780197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42755069 - 42755114
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttttata 46  Q
    |||||||||||||||||||||||| |||||  ||||||||| ||||    
T  42755069 ttttcttgataaaatctttcttgatatatatcattgctcttatata 42755114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26042143 - 26042183
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||| | |||||| |||||||||    
T  26042143 ttttcttgataaaatctttcttaatatatagcattgctctt 26042183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2477674 - 2477633
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  2477674 ttttcttgataaaatctttcttgatatatagcattgctcttt 2477633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6043538 - 6043578
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  6043538 ttttcttgataaaatctttcttgatatatagcattgctctt 6043578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3362816 - 3362777
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  3362816 ttttcttgataaaatctttcttgatatatagcattgctct 3362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38899753 - 38899792
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  38899753 ttttcttgataaaatctttcttgatatatagcattgctct 38899792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11361158 - 11361196
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  11361158 ttttcttgataaaatctttcttgatatatagcattgctc 11361196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12850839 - 12850801
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  12850839 ttttcttgataaaatctttcttgatatatagcattgctc 12850801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4892240 - 4892199
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  4892240 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 4892199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14138706 - 14138666
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  14138706 ttttcttgataaaatctttcttgatatataacattgctctt 14138666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10442816 - 10442857
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  10442816 ttttcttgataaaatctttcttgatatatagcattgctcttt 10442857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4751484 - 4751440
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttttat 45  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||    
T  4751484 ttttcttgataaaatctttcttgatatatagcattgctctgttat 4751440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31078846 - 31078885
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  31078846 ttttcttgataaaatctttcttgatatatagcattgctct 31078885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33530715 - 33530754
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  33530715 ttttcttgataaaatctttcttgatatatagcattgctct 33530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2624875 - 2624837
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  2624875 ttttcttgataaaatctttcttgatatatagcattgctc 2624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21802349 - 21802391
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttt 43  Q
    ||||||||||||||| |||||||| |||||| |||||||||||    
T  21802349 ttttcttgataaaatatttcttgatatatagcattgctctttt 21802391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22199299 - 22199261
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  22199299 ttttcttgataaaatctttcttgatatatagcattgctc 22199261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36072985 - 36072947
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  36072985 ttttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 49387915 - 49387953
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  49387915 ttttcttgataaaatctttcttgatatatagcattgctc 49387953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7745139 - 7745176
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgct 38  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  7745139 ttttcttgataaaatctttcttgatatatagcattgct 7745176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24128277 - 24128236
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  24128277 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 24128236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24392705 - 24392664
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  24392705 ttttcttgagaaaatctttcttgatatatagcattgctcttt 24392664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47290104 - 47290063
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  47290104 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 47290063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23964492 - 23964536
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttttat 45  Q
    |||| ||||||||||||||||||| |||||  |||||||||||||    
T  23964492 tttttttgataaaatctttcttgatatataacattgctcttttat 23964536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 9293604 - 9293645
Alignment:
Q  2 tttcttgataaaatctttcttgacatatagtattgctctttt 43  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  9293604 tttcttgataaaatctttcttgatatatagcattgctctttt 9293645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35160795 - 35160756
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  35160795 ttttcttgataaaatctttcttgatatatagcattgctct 35160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21936119 - 21936081
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  21936119 ttttcttgataaaatctttcttgatatatagcattgctc 21936081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10661925 - 10661888
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgct 38  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  10661925 ttttcttgataaaatctttcttgatatatagcattgct 10661888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13354884 - 13354843
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    |||||||||||||||||||||||| |||||  ||||||||||    
T  13354884 ttttcttgataaaatctttcttgatatataacattgctcttt 13354843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23268089 - 23268129
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  23268089 ttttcttgaaaaaatctttcttgatatatagcattgctctt 23268129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15329311 - 15329271
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  15329311 ttttcttgataaaatctttcttgatatatagcattgctctt 15329271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45637750 - 45637710
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  45637750 ttttcttgataaaatctttcttgatatatagcattgctctt 45637710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15577877 - 15577916
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  15577877 ttttcttgataaaatctttcttgatatatagcattgctct 15577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3962017 - 3961979
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  3962017 ttttcttgataaaatctttcttgatatatagcattgctc 3961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4974762 - 4974800
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  4974762 ttttcttgataaaatctttcttgatatatagcattgctc 4974800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24395010 - 24394972
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  24395010 ttttcttgataaaatctttcttgatatatagcattgctc 24394972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42611849 - 42611811
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  42611849 ttttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48880954 - 48880992
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  48880954 ttttcttgataaaatctttcttgatatatagcattgctc 48880992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37477107 - 37477147
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  37477107 ttttcttgagaaaatctttcttgatatatagcattgctctt 37477147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6127313 - 6127273
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  6127313 ttttcttgataaaatctttcttgatatatagcattgctctt 6127273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23291111 - 23291151
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  23291111 ttttcttgataaaatctttcttgatatatagcattgctctt 23291151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28675186 - 28675146
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctt 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  28675186 ttttcttgataaaatctttcttgatatatagcattgctctt 28675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33695354 - 33695393
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  33695354 ttttcttgataaaatctttcttgatatatagcattgctct 33695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33696734 - 33696695
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctct 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  33696734 ttttcttgataaaatctttcttgatatatagcattgctct 33696695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 17705492 - 17705530
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  17705492 ttttcttgataaaatctttcttgatatatagcattgctc 17705530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18365600 - 18365641
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    |||| ||||||||||||||||||| |||||| ||||||||||    
T  18365600 tttttttgataaaatctttcttgatatatagcattgctcttt 18365641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18370864 - 18370905
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    |||| ||||||||||||||||||| |||||| ||||||||||    
T  18370864 tttttttgataaaatctttcttgatatatagcattgctcttt 18370905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11659 - 11621
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctc 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  11659 ttttcttgataaaatctttcttgatatatagcattgctc 11621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41049 - 41007
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctctttt 43  Q
    |||| ||||||||||||||||||| |||||| |||||||||||    
T  41049 tttttttgataaaatctttcttgatatatagcattgctctttt 41007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12880 - 12839
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  12880 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 12839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4434 - 4393
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagtattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  4434 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 4393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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