View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4244_high_1 (Length: 807)
Name: NF4244_high_1
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 19 - 798
Target Start/End: Original strand, 45930009 - 45930788
Alignment:
| Q |
19 |
cattcattatatcacctagaattacttttgaggtcagtgtgcgtcttcttggagggctgatggccttggggtatacaattgcagcaatcctgaaaagaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45930009 |
cattcattatatcacctagaattacttttgaggtcagtgtgcgtcttcttggagggctgatggccttggggtatacaattgcagcaatcctgaaaagaag |
45930108 |
T |
|
| Q |
119 |
cagccatgtctttcacgatgataaagtatccataaaaactgactggcttgaacagcttaatcgccaatatgtccaggtacaacagcatattgtttgtatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45930109 |
cagccatgtctttcacgatgataaagtatccataaaaactgactggctcgaacagcttaatcgccaatatgtccaggtacaacagcatattgtttgtatc |
45930208 |
T |
|
| Q |
219 |
tctcccttcttacttttttctatgcttaatcgtcaatattgtctggtacaaaagaaattccaatactagcttgaccctcacaacccgctcttttccctct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45930209 |
tctcccttcttacttttttctatgcttaatcgtcaatattgtctggtacaaaagaaattccaatactagctcgaccctcacaacccgctcttttccctct |
45930308 |
T |
|
| Q |
319 |
attcttttgttgagtgttgtcttccattcatatatgttattattaacttgtaacctacttgctgctctatttataggggtaaggtcacttctcgacccac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45930309 |
attcttttgttgagtgttgtcttccattcatatatgttattattaacttgtaacctacttgctactccatttataggggtaaggtcacttctcgacccac |
45930408 |
T |
|
| Q |
419 |
ttaagatcctacgttaacagtaatcagtgttgacccacccggttaattcacacatgctaagaacatttctctcagttttaatgttttattgactttcaat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45930409 |
ttaagatcctacgttaacagtaatcagtgttgacccacccggttaattcacacatgctaagaacatttctctctgttttaatgttttattgactttcaat |
45930508 |
T |
|
| Q |
519 |
gttgtctacgttatgtctttgatggggagaagtggttatgcaatcatttacttcgtaattacagccgagtttcaaacaatcgatgcttatgaaatacatg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45930509 |
gttgtctacgttatgtctttgatggggagaagtggttatgcaatcatttacttcgtaattgcagccgagtttcaaacaatcgatgcttatgaaatacatg |
45930608 |
T |
|
| Q |
619 |
tggtacaaagagtgtcggtctaacatatttgttgatattgtatcttattaatttacnnnnnnngtgaagtaccatgctacttgtacaatatcttattcta |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45930609 |
tggtacaaagagtgtcggtctaacatatttgttgatattgtatcttattaatttacaaaaaaagtgaagtaccatgctacttgtacaatatcttattcta |
45930708 |
T |
|
| Q |
719 |
gaaaatactgtatacattatacaactcgactgtatttagaatatactaactatcatatatatttcttttcacaggttctg |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45930709 |
gaaaatactgtatacattatacaactcgactgtatttagaatatactaactatcatatatatttcttttcacagtttctg |
45930788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 28076134 - 28076238
Alignment:
| Q |
27 |
atatcacctagaattacttttgaggtcagtgtgcgtcttcttggagggctgatggccttggggtatacaattgcagcaatcctgaaaagaagcagccatg |
126 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||| || || ||||||||||| ||||| || || | ||||| || |||| ||| |||| |
|
|
| T |
28076134 |
atatcaccgagaattacttttgaggtcagtgtgcgcctccttggtggactaatggccttgggatatacgatagctactatccttaagagaaacagtcatg |
28076233 |
T |
|
| Q |
127 |
tcttt |
131 |
Q |
| |
|
||||| |
|
|
| T |
28076234 |
tcttt |
28076238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 29536842 - 29536945
Alignment:
| Q |
27 |
atatcacctagaattacttttgaggtcagtgtgcgtcttcttggagggctgatggccttggggtatacaattgcagcaatcctgaaaagaagcagccatg |
126 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||| | || || ||||| ||| | || || |||||||| ||||||| |
|
|
| T |
29536842 |
atatcaccgagaattacttttgcggtcagtgtgcgtcttcttggtggactgatggcccttggatacacaatagcaactattcttaaaagaagtagccatg |
29536941 |
T |
|
| Q |
127 |
tctt |
130 |
Q |
| |
|
|||| |
|
|
| T |
29536942 |
tctt |
29536945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University