View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4244_high_10 (Length: 355)
Name: NF4244_high_10
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 1037652 - 1037312
Alignment:
| Q |
3 |
acacagacccaaacattatcctaaagccaaaaagtctctattcttgagatataagtcaagttacaaaggcaatgttcttcttgatttaaactccagagaa |
102 |
Q |
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| T |
1037652 |
acacagaaccaaacattatcctaaagccaaaaagtttctattcttgggatataagtcaagttacaaaggctatgttcttcttgatttaaactccagagaa |
1037553 |
T |
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| Q |
103 |
atatttgttacacgcaatgtcgcattccatgagcatgttttgccatactataaatcatatatgtgtgttacttctaattggaactattttctatctcaga |
202 |
Q |
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| T |
1037552 |
atatttgttacacgcaatgtcgcattccatgagcatgttttgccatactataaatcatatatgtgtgttacttctaattggaactattttctatctcaga |
1037453 |
T |
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| Q |
203 |
act----ccagttcacctattacacaccttactgttttagatgatctctcacatgaacctcagacacatatccatcagaaccctcgtgttgataatgcac |
298 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1037452 |
actccagccagttcacctattacacaccttactgttttagatgatctctcacatgaacctcagacacatatccatcagaacccttgtgttgataatgcaa |
1037353 |
T |
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| Q |
299 |
cttgatgacatgaaattatatagggtttttagtgccttttt |
339 |
Q |
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| T |
1037352 |
cttgatgacatgaaattatatagggtttttagtgccttttt |
1037312 |
T |
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