View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4244_high_13 (Length: 252)

Name: NF4244_high_13
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4244_high_13
NF4244_high_13
[»] chr8 (28 HSPs)
chr8 (3-241)||(10667959-10668189)
chr8 (16-241)||(24191380-24191611)
chr8 (16-116)||(39174740-39174840)
chr8 (16-106)||(32553930-32554020)
chr8 (16-106)||(35801002-35801092)
chr8 (16-106)||(39173119-39173209)
chr8 (16-116)||(10669458-10669558)
chr8 (155-247)||(38129-38223)
chr8 (16-98)||(7844714-7844796)
chr8 (155-241)||(22621019-22621105)
chr8 (16-106)||(32552299-32552389)
chr8 (16-116)||(24192676-24192776)
chr8 (129-238)||(43203164-43203274)
chr8 (16-116)||(35799455-35799554)
chr8 (152-237)||(31844513-31844599)
chr8 (129-237)||(39516384-39516494)
chr8 (164-241)||(24068472-24068548)
chr8 (129-241)||(42793821-42793934)
chr8 (48-116)||(43202131-43202199)
chr8 (129-192)||(7770116-7770179)
chr8 (129-192)||(7777793-7777856)
chr8 (16-98)||(35070688-35070770)
chr8 (155-192)||(7795912-7795949)
chr8 (152-216)||(7844854-7844917)
chr8 (48-116)||(31845807-31845875)
chr8 (156-241)||(45395900-45395985)
chr8 (155-192)||(7815189-7815226)
chr8 (25-65)||(32798596-32798636)
[»] chr3 (24 HSPs)
chr3 (16-241)||(10301700-10301931)
chr3 (129-241)||(10339873-10339986)
chr3 (16-97)||(7270326-7270407)
chr3 (16-116)||(53194624-53194724)
chr3 (129-241)||(47766835-47766948)
chr3 (16-188)||(7271529-7271706)
chr3 (16-122)||(48083230-48083336)
chr3 (16-97)||(44601652-44601733)
chr3 (129-241)||(48253052-48253165)
chr3 (47-106)||(10338772-10338831)
chr3 (16-92)||(48084990-48085066)
chr3 (155-234)||(21515408-21515486)
chr3 (17-116)||(54110296-54110395)
chr3 (129-236)||(14744185-14744291)
chr3 (157-230)||(53809388-53809462)
chr3 (152-241)||(44601794-44601882)
chr3 (152-201)||(54750368-54750417)
chr3 (16-116)||(44603055-44603155)
chr3 (152-188)||(48084676-48084712)
chr3 (152-241)||(53193236-53193325)
chr3 (16-94)||(54108542-54108620)
chr3 (16-116)||(10300942-10301043)
chr3 (16-113)||(10339986-10340082)
chr3 (16-97)||(46368811-46368892)
[»] chr4 (33 HSPs)
chr4 (16-241)||(49895043-49895275)
chr4 (16-241)||(44499867-44500097)
chr4 (16-116)||(44498463-44498563)
chr4 (129-241)||(47667297-47667410)
chr4 (16-123)||(56085350-56085457)
chr4 (9-105)||(19750317-19750413)
chr4 (9-105)||(19789393-19789489)
chr4 (155-241)||(41348384-41348470)
chr4 (129-247)||(46795904-46796023)
chr4 (16-98)||(4872262-4872344)
chr4 (155-241)||(3528335-3528425)
chr4 (152-241)||(26631099-26631190)
chr4 (16-116)||(45535049-45535149)
chr4 (27-116)||(1519825-1519914)
chr4 (48-201)||(36846482-36846640)
chr4 (155-241)||(56001152-56001240)
chr4 (16-116)||(23104020-23104120)
chr4 (129-241)||(29665458-29665571)
chr4 (129-241)||(38554048-38554161)
chr4 (48-123)||(1521200-1521275)
chr4 (152-191)||(56086483-56086522)
chr4 (130-240)||(39056548-39056659)
chr4 (25-65)||(1831327-1831367)
chr4 (152-216)||(4872139-4872202)
chr4 (21-65)||(6348163-6348207)
chr4 (48-116)||(26629826-26629894)
chr4 (25-65)||(37882846-37882886)
chr4 (155-201)||(26376455-26376501)
chr4 (130-185)||(35348920-35348975)
chr4 (152-241)||(45536355-45536444)
chr4 (16-116)||(4871497-4871597)
chr4 (25-65)||(6349617-6349657)
chr4 (25-65)||(27850996-27851036)
[»] chr7 (21 HSPs)
chr7 (16-241)||(3330695-3330923)
chr7 (16-116)||(44376701-44376801)
chr7 (16-116)||(44385568-44385668)
chr7 (16-115)||(3332171-3332270)
chr7 (16-116)||(44372732-44372832)
chr7 (16-116)||(44381588-44381688)
chr7 (16-106)||(9081396-9081486)
chr7 (129-247)||(17288118-17288239)
chr7 (29-123)||(29589276-29589370)
chr7 (129-247)||(41515115-41515234)
chr7 (16-116)||(16755874-16755974)
chr7 (16-91)||(48312691-48312766)
chr7 (129-238)||(45721653-45721763)
chr7 (48-214)||(43442672-43442844)
chr7 (130-240)||(10955968-10956079)
chr7 (129-236)||(35296706-35296812)
chr7 (17-94)||(48312028-48312105)
chr7 (129-201)||(28326315-28326387)
chr7 (25-66)||(32256458-32256499)
chr7 (25-65)||(40811352-40811392)
chr7 (25-65)||(47456439-47456479)
[»] chr1 (23 HSPs)
chr1 (16-241)||(6047922-6048151)
chr1 (155-241)||(26803101-26803187)
chr1 (16-123)||(6049430-6049537)
chr1 (155-241)||(40110537-40110623)
chr1 (16-123)||(3615250-3615357)
chr1 (16-123)||(52076534-52076641)
chr1 (16-116)||(3617510-3617610)
chr1 (16-123)||(9226221-9226328)
chr1 (27-123)||(5611740-5611836)
chr1 (48-123)||(26287790-26287865)
chr1 (152-241)||(48528777-48528868)
chr1 (16-90)||(17190556-17190630)
chr1 (155-241)||(24516479-24516568)
chr1 (129-241)||(40533484-40533598)
chr1 (152-201)||(5611880-5611929)
chr1 (27-116)||(26286426-26286515)
chr1 (16-97)||(52078126-52078207)
chr1 (48-116)||(5613098-5613166)
chr1 (16-116)||(27556273-27556373)
chr1 (152-241)||(12667156-12667246)
chr1 (152-188)||(26287711-26287747)
chr1 (25-65)||(50444762-50444802)
chr1 (25-65)||(52627527-52627567)
[»] chr2 (5 HSPs)
chr2 (16-116)||(23233709-23233809)
chr2 (16-98)||(23231543-23231625)
chr2 (155-241)||(4919975-4920062)
chr2 (155-204)||(42368230-42368279)
chr2 (157-241)||(25569916-25570000)
[»] chr5 (8 HSPs)
chr5 (39-241)||(10736819-10737028)
chr5 (16-116)||(9220473-9220573)
chr5 (129-229)||(8188098-8188197)
chr5 (152-238)||(4124902-4124990)
chr5 (157-241)||(9170774-9170858)
chr5 (129-201)||(9219298-9219370)
chr5 (152-241)||(1103849-1103939)
chr5 (25-65)||(325249-325289)
[»] chr6 (4 HSPs)
chr6 (25-216)||(18242217-18242414)
chr6 (32-115)||(18240418-18240502)
chr6 (152-241)||(11968349-11968438)
chr6 (155-216)||(29675622-29675683)
[»] scaffold0219 (1 HSPs)
scaffold0219 (157-237)||(7044-7124)
[»] scaffold0687 (1 HSPs)
scaffold0687 (155-192)||(6497-6534)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 10667959 - 10668189
Alignment:
Q  3 aagtgtaaagctgaattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacattt 102  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||    
T  10667959 aagtgtaaggctaaattaatcaaatggtccctcaactaatttcgagttttcattttggtcccataaattttaaaatcagcattttggtccctcaacattt 10668058  T
Q  103 gctctgttagtcaatttggtctcacc------ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagt 196  Q
    ||||||||||||||||||||| || |      |||||||||||||||        ||||  ||||    |||||||||||||||||||  ||||||||||    
T  10668059 gctctgttagtcaatttggtcacatccgttggttttttaatgtctaa--------attt--tttt----atttgattgaatgtccattaaatctaacagt 10668144  T
Q  197 gaaccaccagcacataatttcttcacttttcatcatcttctctct 241  Q
    || ||  ||||||||||||| |||||||||| |||||||||||||    
T  10668145 gacccgtcagcacataattttttcacttttcttcatcttctctct 10668189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 24191380 - 24191611
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||| |||||||||||||||||||||||| |||| ||||||| | | ||||||||| |||||||||| || ||| |||||||||||| |||    
T  24191380 aattaatcaaatgatccctcaactaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctcttaacttttgctctgttactca 24191479  T
Q  116 atttggt-ctcacc-----ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcac 209  Q
    | ||| | | | ||     ||| ||||||||||||       |||||||||||||| |||||||| ||||||||||||||| | ||||||||  ||||||    
T  24191480 aattgatccactccgttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtcagcac 24191578  T
Q  210 ataa-tttcttcacttttcatcatcttctctct 241  Q
     ||| ||| || | |||||||||||||||||||    
T  24191579 ctaattttttttatttttcatcatcttctctct 24191611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 39174840 - 39174740
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||||||||||||||||||   |||||||||||| |||| || ||||||||||||| ||||||||||||||||| ||||||| |||| |||    
T  39174840 aattaatcaaatggtccctcaactaattataagttttcattttggtcctataagttttaaaatcatcattttggtccctcaacttttgctccgttattca 39174741  T
Q  116 a 116  Q
    |    
T  39174740 a 39174740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 32554020 - 32553930
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||| || ||| ||||||||  ||||||||||||||||| |||||||    
T  32554020 aattaatcaaatggtccctcaactaattacgagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctc 32553930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 35801092 - 35801002
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 106  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||| || ||| ||||||||  |||||| |||||||||| |||||||    
T  35801092 aattaatcaaatggtccctcaactaattacgagttttcattttggtcctataagtcttaaaatcgtcattttagtccctcaacttttgctc 35801002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 39173119 - 39173209
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 106  Q
    |||||||||||||||||||||| ||||| |||||||||||||| |||| || ||| ||||||||  ||||||||||||||||| |||||||    
T  39173119 aattaatcaaatggtccctcaattaattacgagttttcattttggtcctataagtcttaaaatcgtcattttggtccctcaacttttgctc 39173209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 10669558 - 10669458
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||| ||| |||||||||||||||| ||||||||||||| ||||||| | | ||||||||| ||||||||| ||||||| ||||||| |||| |||    
T  10669558 aattaatccaatagtccctcaactaattttgagttttcattttggtcccataaatcttaaaatcaacattttggtacctcaacgtttgctccgttattca 10669459  T
Q  116 a 116  Q
    |    
T  10669458 a 10669458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 38129 - 38223
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttctt--cacttttcatcatcttctctctgctcct 247  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||  |||||| |||||| ||  |||||||||||||||||||||| |||||    
T  38129 tgattttaaccatttaattgcatgtccattgtatttaacagtgaaccgtcagcacctaatttttttccacttttcatcatcttctctcttctcct 38223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 7844714 - 7844796
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaac 98  Q
    |||||||| |||||||||| |||||||| | |||||||||||| ||||||| ||| ||||||||| |||||||||||||||||    
T  7844714 aattaatccaatggtcccttaactaattaccagttttcattttggtcccataagtcttaaaatcatcattttggtccctcaac 7844796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 22621105 - 22621019
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatcttctctct 241  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||||  || ||| |||||| ||||||||||||||||||||||||    
T  22621105 tgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctctct 22621019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 32552299 - 32552389
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 106  Q
    |||||||| ||||||||||||||||||| ||||||||||||||  ||| || ||| ||||||||  ||||||||||||||||| |||||||    
T  32552299 aattaatctaatggtccctcaactaattacgagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctc 32552389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 24192776 - 24192676
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||| |||||||||||||| ||||||||||||||| |||| ||||||| | | ||||||||| |||||||||| |||||| ||| ||| |||| |||    
T  24192776 aattaattaaatggtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctctcaacttttactccgttaatca 24192677  T
Q  116 a 116  Q
    |    
T  24192676 a 24192676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 43203274 - 43203164
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       |||| ||||||| |||||||||| ||||||||||||| ||| ||||||| | |||||| ||| ||| ||||||||||    
T  43203274 ttttttaatgtctaaattttttgatttaattttaaacatttgattgcatgtccattgtatttaaaagtgaactatcagcacctaatttttttcacttttc 43203175  T
Q  228 atcatcttctc 238  Q
    |||||||||||    
T  43203174 atcatcttctc 43203164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 35799455 - 35799554
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||||||| |||||||||| | |||||||||||| |||  || ||| ||||||| | ||||||||||||||||| ||||||| |||| |||    
T  35799455 aattaatcaaatggtcc-tcaactaattacaagttttcattttggtcttataagtcttaaaattatcattttggtccctcaacttttgctccgttattca 35799553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 31844513 - 31844599
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttcatcatcttct 237  Q
    ||||||||||||||| ||||||| ||||| ||||||  ||||||||||||| |||||| ||| ||| ||||||||| ||||||||||    
T  31844513 atttgattttaaccacttgattgcatgtctattgtaattaacagtgaaccatcagcacctaatttttttcacttttaatcatcttct 31844599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 39516494 - 39516384
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa--tttcttcactttt 226  Q
    ||||||||||||||||       || |||||||||||||||||||| ||||||||||||||||| ||||||||  |||||  |||  ||| |||| ||||    
T  39516494 ttttttaatgtctaaattttttcatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcatctaatcttttttcattttt 39516395  T
Q  227 catcatcttct 237  Q
    |||||||||||    
T  39516394 catcatcttct 39516384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 24068472 - 24068548
Alignment:
Q  164 ccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatcttctctct 241  Q
    ||||||||||| ||||||||||||||||| ||||||||  |||||| |||||| ||||||  ||||||||||||||||    
T  24068472 ccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaattt-ttcactgatcatcatcttctctct 24068548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 42793821 - 42793934
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||| ||||| ||||||||||||  ||| ||||||||| |  ||| ||| ||| ||| ||||||    
T  42793821 ttttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccatcgacacctaatttttttcgcttttc 42793920  T
Q  228 atcatcttctctct 241  Q
    ||||||||||||||    
T  42793921 atcatcttctctct 42793934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 43202131 - 43202199
Alignment:
Q  48 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 116  Q
    ||||||||||||||||||| | |  |||||||| ||||||||||||||||| ||||| | |||||||||    
T  43202131 gttttcattttagtcccataactcgtaaaatcaacattttggtccctcaacgtttgcaccgttagtcaa 43202199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 7770116 - 7770179
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaa 192  Q
    ||||||||||||||||       || |||||||||||||||||||| |||||||||||||||||    
T  7770116 ttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgtatctaa 7770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 7777793 - 7777856
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaa 192  Q
    ||||||||||||||||       || |||||||||||||||||||| |||||||||||||||||    
T  7777793 ttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgtatctaa 7777856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 35070770 - 35070688
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaac 98  Q
    ||||||||||||||||| |||  ||||| | |||||||||||| |||  || ||| ||||||||| ||||||||| |||||||    
T  35070770 aattaatcaaatggtccttcagttaattaccagttttcattttggtcatataagtcttaaaatcatcattttggttcctcaac 35070688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 7795912 - 7795949
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaa 192  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7795912 tgattttaaccatttgattgtatgtccattgtatctaa 7795949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 7844854 - 7844917
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataattt 216  Q
    ||||||||||||||||| |||||||| |||||||||||| | ||||||||  |||||| ||||||    
T  7844854 atttgattttaaccattcgattgaatatccattgtatct-atagtgaaccgtcagcacctaattt 7844917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 31845875 - 31845807
Alignment:
Q  48 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 116  Q
    ||||||||||| ||||||| | |  |||||||| ||||||||||||||||| ||||||| |||| ||||    
T  31845875 gttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgttaatcaa 31845807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 45395985 - 45395900
Alignment:
Q  156 gattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttcatcatcttctctct 241  Q
    |||||||||| |||||||| ||||||||||||| | | ||| ||||| | |||| ||| ||| ||||||||||||||||||| ||||    
T  45395985 gattttaaccgtttgattgcatgtccattgtatat-atagtaaaccatcggcacctaatttttttcacttttcatcatcttccctct 45395900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 7815189 - 7815226
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaa 192  Q
    |||||||||||||||||||  |||||||||||||||||    
T  7815189 tgattttaaccatttgattctatgtccattgtatctaa 7815226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 32798636 - 32798596
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  32798636 aatggtccctcaaataatttcaagttttcattttggtccca 32798596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 10301931 - 10301700
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||  ||||||||||||||||||||| | |||||||||| ||||||| ||| ||||||||| || | |||||| ||||| ||||||| ||||||||    
T  10301931 aattaattcaatggtccctcaactaatttccatttttcattttggtcccataagtcttaaaatcatcaatatggtccttcaacttttgctccgttagtca 10301832  T
Q  116 atttggtctcacct------tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcac 209  Q
    ||||||| ||  ||      |||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  10301831 atttggtgtcctctgttagttttttaatgtctaaattttttgatttgattttaaccatttgattgaatgtccattgtatttaacagtgaaccatcagcac 10301732  T
Q  210 ataa-tttcttcacttttcatcatcttctctct 241  Q
    |||| ||| ||||| ||||||||||||||||||    
T  10301731 ataatttttttcac-tttcatcatcttctctct 10301700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 10339986 - 10339873
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       ||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||||| ||| ||||||||||    
T  10339986 ttttttaatgtctaaattttttgatttgatttgaaccatttgattgaatgtccattgtatttaacagtgaaccgtcagcacataatttttttcacttttc 10339887  T
Q  228 atcatcttctctct 241  Q
    ||||||||||||||    
T  10339886 atcatcttctctct 10339873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 7270326 - 7270407
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaa 97  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||||||| ||| ||||||||| ||||||||||||||||    
T  7270326 aattaatcaaatgatccctcaactaatttccagttttcatttttgtcccataagtcttaaaatcaacattttggtccctcaa 7270407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 53194724 - 53194624
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||| ||||||||||||||||||| | |||||||||||| || |||| ||||||||||||| ||||||||||| ||||| |||||| ||||| |||    
T  53194724 aattaatccaatggtccctcaactaattaccagttttcattttggttccataagttttaaaatcatcattttggtccttcaacttttgctttgttattca 53194625  T
Q  116 a 116  Q
    |    
T  53194624 a 53194624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 47766948 - 47766835
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||||||||| ||||||||||||||||| ||||||||  |||||| ||| ||| |||||||||     
T  47766948 ttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaatttttttcacttttg 47766849  T
Q  228 atcatcttctctct 241  Q
    ||||||||||||||    
T  47766848 atcatcttctctct 47766835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 7271706 - 7271529
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||| ||||||||||||||||||||| | |||| |||||| || ||| ||||||||||||||||| ||||| ||| ||| ||||||| |||| |||    
T  7271706 aattaatccaatggtccctcaactaatttccaatttttattttaatctcataagttttaaaatcagcatgttggt-ccttaacttttgctccgttattca 7271608  T
Q  116 atttggtctcacc------ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtat 188  Q
    |||  ||| |  |      ||||||||||||||||       |||| |||||||||||||||||| |||||||||||||    
T  7271607 attccgtcccctccgttagttttttaatgtctaaactttttgatttaattttaaccatttgattgcatgtccattgtat 7271529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 48083230 - 48083336
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||| ||||||||||||| ||||||||   ||||||||||||  |||| | ||||||||||||| ||||||||||||| ||| ||||||| |||| |||    
T  48083230 aattattcaaatggtcccttaactaattctcagttttcattttgatcccttaagttttaaaatcatcattttggtcccttaacctttgctccgttattca 48083329  T
Q  116 atttggt 122  Q
    |||||||    
T  48083330 atttggt 48083336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 44601652 - 44601733
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaa 97  Q
    ||||||||||||||||||||||||||||   |||||||||||||||| ||| ||| ||||||||| || |  ||||||||||    
T  44601652 aattaatcaaatggtccctcaactaattctcagttttcattttagtctcataagtcttaaaatcatcaatcgggtccctcaa 44601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 48253052 - 48253165
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||||||||| ||||||||||||||||| |||||||   || ||| ||| ||| |||| |||||    
T  48253052 ttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaactgtcaacacctaatttttttcatttttc 48253151  T
Q  228 atcatcttctctct 241  Q
     |||||||||||||    
T  48253152 ttcatcttctctct 48253165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 10338772 - 10338831
Alignment:
Q  47 agttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 106  Q
    |||||||||||| ||||||| | ||||||||||| ||||||||||||||||| |||||||    
T  10338772 agttttcattttggtcccataaattttaaaatcatcattttggtccctcaacgtttgctc 10338831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 48085066 - 48084990
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtcc 92  Q
    ||||||||||||||||||||||||||||   |||||| ||||| ||| | | ||| ||||||||| |||||||||||    
T  48085066 aattaatcaaatggtccctcaactaattctcagtttttattttggtctcttaagtcttaaaatcatcattttggtcc 48084990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 21515408 - 21515486
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatct 234  Q
    |||||||||||| ||||||| | ||||||||||||||| |||| |||| || |||||||||| ||  |||||||||||||    
T  21515408 tgattttaaccacttgattgcaggtccattgtatctaatagtgcaccatcaccacataattt-ttttcttttcatcatct 21515486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 54110395 - 54110296
Alignment:
Q  17 attaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 116  Q
    ||||||||||||||||||||| |||||   | |||||  ||| ||| ||| ||| ||||||||| |||||| |||||||| | |||||||||||| ||||    
T  54110395 attaatcaaatggtccctcaattaattctcaattttcgctttggtctcataagtcttaaaatcatcattttagtccctcatcttttgctctgttattcaa 54110296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 14744185 - 14744291
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttca 228  Q
    ||||||||||||||||       || |||||||||||  ||||||| ||||||||| ||  ||  ||||||||| |||||| |||||| |||||||||||    
T  14744185 ttttttaatgtctaaattttttgatatgattttaaccgattgattgcatgtccattatacatat-agtgaaccatcagcacctaattttttcacttttca 14744283  T
Q  229 tcatcttc 236  Q
    ||||||||    
T  14744284 tcatcttc 14744291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 53809462 - 53809388
Alignment:
Q  157 attttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttcatc 230  Q
    |||||||||||||||||| ||||| ||||||| |||||||||| |  |||||| ||| ||| |||||||||||||    
T  53809462 attttaaccatttgattgcatgtctattgtatttaacagtgaatcgtcagcacctaatttttttcacttttcatc 53809388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 44601794 - 44601882
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatcttctctct 241  Q
    |||||||||||||| || |||||||| |||||||||||| | ||||||||  |||||  |||||| || | ||||||||||| |||||||    
T  44601794 atttgattttaaccgttcgattgaatatccattgtatct-atagtgaaccgtcagcatctaatttttttatttttcatcatcctctctct 44601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 54750417 - 54750368
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 201  Q
    ||||||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  54750417 atttgattttaaccatttgattgtatgtccaatgtattttacagtgaacc 54750368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 44603155 - 44603055
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||| |||||||||||||||||||||  |||||| ||||| ||||||| | | ||||||| | || |   |||||||||| ||||||| |||| |||    
T  44603155 aattaattaaatggtccctcaactaattttcagtttttattttggtcccataaatcttaaaataatcaatcgagtccctcaacttttgctccgttattca 44603056  T
Q  116 a 116  Q
    |    
T  44603055 a 44603055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 48084712 - 48084676
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtat 188  Q
    ||||||||||||||||| |||||||||||||||||||    
T  48084712 atttgattttaaccattcgattgaatgtccattgtat 48084676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 53193236 - 53193325
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacata-atttcttcacttttcatcatcttctctct 241  Q
    |||||||||||| ||||  |||||||||||||||||||| | ||||||||  || ||| ||  ||| ||||||||||| ||||||||||||    
T  53193236 atttgattttaatcattcaattgaatgtccattgtatct-atagtgaaccgtcaacacctattttttttcacttttcaccatcttctctct 53193325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 54108542 - 54108620
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccct 94  Q
    |||||| | |||||||||||||||||||   ||||||| |||| ||||||| ||| ||||||| | ||||||| |||||    
T  54108542 aattaacccaatggtccctcaactaattctcagttttcgttttggtcccataagtcttaaaattatcattttgatccct 54108620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 10300942 - 10301043
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcg-agttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtc 114  Q
    |||||||  |||||||||| |||||||||   |||||||||||| || |||| | | ||||||||| || | |||||||||||| ||||||| |||| ||    
T  10300942 aattaattcaatggtcccttaactaatttttcagttttcattttggttccataaatcttaaaatcatcaatctggtccctcaacgtttgctccgttattc 10301041  T
Q  115 aa 116  Q
    ||    
T  10301042 aa 10301043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 10340082 - 10339986
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagt 113  Q
    |||||||  ||||||||||||||||||||| | |||||||||| ||| |||   | ||||||||| ||  ||||||| ||||| ||||||| ||||||    
T  10340082 aattaattcaatggtccctcaactaatttccatttttcattttggtctcatatttcttaaaatcatca-attggtccttcaacttttgctccgttagt 10339986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 46368811 - 46368892
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaa 97  Q
    ||||||||||||||||||||| ||||||   ||| |||||||| ||| ||| ||  ||||||||| ||||||| ||| ||||    
T  46368811 aattaatcaaatggtccctcagctaattataagtattcattttggtctcataaggcttaaaatcatcattttgatccttcaa 46368892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 49895043 - 49895275
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggt-ccctcaacatttgctctgttagtc 114  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||| |||| || ||| | ||||||||| |||||||| ||||||| || | ||    
T  49895043 aattaatcaaatggtccctcaactaattaccagttttcattttggtcccataagttctataattatcattttggtcccctcaacttttgctccgtcattc 49895142  T
Q  115 aatttggtctc-acc-----ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagca 208  Q
    ||||||||||| |||     ||| |||||| ||||        |||||||| |||||||||||||| | |||| |||||||||| ||||||||| || ||    
T  49895143 aatttggtctctaccgttagtttcttaatgcctaatttttttgatttgattctaaccatttgattgcaggtccgttgtatctaatagtgaaccatcaaca 49895242  T
Q  209 cataatttcttcacttttcatcatcttctctct 241  Q
    | |||||| ||  |||||| |||||||||||||    
T  49895243 cctaatttttttccttttcttcatcttctctct 49895275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 44500097 - 44499867
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||| |||| ||||||||| ||||||||||||||| |||| ||||||| | | ||||||||| ||||||||||||| ||| ||||||| ||||||||    
T  44500097 aattaatgaaattgtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtcccttaacttttgctccgttagtca 44499998  T
Q  116 atttggt-ctcacc-----ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcac 209  Q
    | ||| | | | ||     ||| |||||||||| |       |||||||||||||| |||||||| ||||||||||||||| | ||||||||  ||||||    
T  44499997 aattgatccactccgttagtttgttaatgtctatattttttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtcagcac 44499899  T
Q  210 ataatttcttcacttttcatcatcttctctct 241  Q
     |||||| || | |||||||||||||||||||    
T  44499898 ctaatttttttatttttcatcatcttctctct 44499867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 44498463 - 44498563
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||| |||||||||||||| ||||||||||||||| |||| ||||||| | | ||||||||| ||||||||||||||||| |||||||||||| |||    
T  44498463 aattaatgaaatggtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctctgttattca 44498562  T
Q  116 a 116  Q
    |    
T  44498563 a 44498563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 47667297 - 47667410
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||||||||| ||||||||||||||||| ||||||||  |||||| ||| ||| ||||||||||    
T  47667297 ttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaatttttttcacttttc 47667396  T
Q  228 atcatcttctctct 241  Q
    ||||||||||||||    
T  47667397 atcatcttctctct 47667410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 56085350 - 56085457
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||||||| |||||||||| | |||||||||||| ||| ||| ||| ||||||||| ||||||||||||||||  ||||||  |||| |||    
T  56085350 aattaatcaaatggtccatcaactaattaccagttttcattttggtctcataagtcttaaaatcatcattttggtccctcaatgtttgcttcgttattca 56085449  T
Q  116 atttggtc 123  Q
    ||||||||    
T  56085450 atttggtc 56085457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 19750413 - 19750317
Alignment:
Q  9 aaagctgaattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgct 105  Q
    |||||| |||||||| ||||||||||||||||||| | ||||||||||||  |||||| ||||||||||||| |||||| |||| ||||| ||||||    
T  19750413 aaagctaaattaatccaatggtccctcaactaattactagttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgct 19750317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 19789393 - 19789489
Alignment:
Q  9 aaagctgaattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgct 105  Q
    |||||| |||||||| ||||||||||||||||||| | ||||||||||||  |||||| ||||||||||||| |||||| |||| ||||| ||||||    
T  19789393 aaagctaaattaatccaatggtccctcaactaattactagttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgct 19789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 41348384 - 41348470
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatcttctctct 241  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||||  || ||| |||||| ||||||||||||||||||||||||    
T  41348384 tgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctctct 41348470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 46796023 - 46795904
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||||||||| ||||||||||||| ||| ||||||||  | |||| ||| ||| ||||||||||    
T  46796023 ttttttaatgtctaaattttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaatttttttcacttttc 46795924  T
Q  228 atcatcttctctctgctcct 247  Q
    |||||||||||||| |||||    
T  46795923 atcatcttctctcttctcct 46795904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 4872344 - 4872262
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaac 98  Q
    |||||||| |||||||||||||||||||   |||||||||||| ||||||| ||| ||||||||| || ||||||||||||||    
T  4872344 aattaatccaatggtccctcaactaattctcagttttcattttggtcccataagtcttaaaatcatcaatttggtccctcaac 4872262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 3528335 - 3528425
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataat----ttcttcacttttcatcatcttctctct 241  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||  || ||| ||||    || ||||||||||||||||||||||||    
T  3528335 tgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcaacacctaattttatttttcacttttcatcatcttctctct 3528425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 26631190 - 26631099
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa--tttcttcacttttcatcatcttctctct 241  Q
    ||||||||||||||| ||||||| ||||| ||||||| |||||||||| || |||||| |||  ||| ||||||||| ||||||||||||||    
T  26631190 atttgattttaaccacttgattgcatgtctattgtatttaacagtgaatcatcagcacctaattttttttcacttttaatcatcttctctct 26631099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 45535049 - 45535149
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||| ||| ||||||||| || |   |||||||||| |||||||||||| |||    
T  45535049 aattaatcaaatagtccctcaactaattctcagttttcattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctctgttattca 45535148  T
Q  116 a 116  Q
    |    
T  45535149 a 45535149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 1519825 - 1519914
Alignment:
Q  27 tggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 116  Q
    |||||||  |||||||||   ||||||||||| ||||||| | |  |||||||| ||| |||||||||||||||||||||||||||||||    
T  1519825 tggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacatttgctctgttagtcaa 1519914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 201
Target Start/End: Complemental strand, 36846640 - 36846482
Alignment:
Q  48 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtctcacct-----tttttaatgtcta 142  Q
    ||||||||||| ||||||| | |  |||||||| ||||||||||||||    ||||||| ||| |||||||||||| |  |      |||||||||||||    
T  36846640 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgtcaatttggtcccttccgttagtttttaatgtcta 36846541  T
Q  143 aannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 201  Q
    ||       ||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  36846540 aattttttgatttgattttaaccatttgattgcatgtccattatatttaacagtgaacc 36846482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 56001240 - 56001152
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttctt--cacttttcatcatcttctctct 241  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |  | |||| |||||| ||  ||||||||||| ||||||||||    
T  56001240 tgattttaaccatttgattgcatgtccattgtatctaatagtgaatcgtcggcacctaatttttttccacttttcatcttcttctctct 56001152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 23104120 - 23104020
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||||||||||||||||||   |||||||||||| ||| ||| ||| ||||||||| || |   |||||||||| ||||||| |||| |||    
T  23104120 aattaatcaaatggtccctcaactaattctcagttttcattttggtctcataagtcttaaaatcatcaatcgagtccctcaacttttgctccgttattca 23104021  T
Q  116 a 116  Q
    |    
T  23104020 a 23104020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 29665571 - 29665458
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||||||||| |||||||||||||||||  |||||||  ||  || ||| ||| ||||||||||    
T  29665571 ttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaattgtgaaccgtcaatacctaatttttttcacttttc 29665472  T
Q  228 atcatcttctctct 241  Q
     |||||||||||||    
T  29665471 ttcatcttctctct 29665458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 38554048 - 38554161
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||||||| | | ||||||||||| ||| ||||||||  || ||| ||| ||| ||||||||||    
T  38554048 ttttttaatgtctaaattttttgatatgattttaaccatttgatcgcacgtccattgtatttaatagtgaaccgtcatcacttaatttttttcacttttc 38554147  T
Q  228 atcatcttctctct 241  Q
    ||||||||||||||    
T  38554148 atcatcttctctct 38554161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 1521275 - 1521200
Alignment:
Q  48 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc 123  Q
    |||||||||||  |||||| | |  |||||||| ||||||||||||||||| ||| ||| ||||||||||||||||    
T  1521275 gttttcattttgatcccataattcgtaaaatcaacattttggtccctcaacttttactccgttagtcaatttggtc 1521200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 56086522 - 56086483
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatcta 191  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  56086522 atttgattttaaccattcgattgaatgtccattgtatcta 56086483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 39056548 - 39056659
Alignment:
Q  130 tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatt-tcttcacttttca 228  Q
    |||||||||||||||       |||||||||||||||||||||||| |||||||||  | ||| |||| |||  || ||| ||||| | |||||||| ||    
T  39056548 tttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgtcaacacctaattgttttcactttcca 39056647  T
Q  229 tcatcttctctc 240  Q
    ||||||||||||    
T  39056648 tcatcttctctc 39056659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 1831367 - 1831327
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  1831367 aatggtccctcaattaatttcaagttttcattttagtccca 1831327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 4872202 - 4872139
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataattt 216  Q
    |||| |||||||||||| ||| ||||||||||||||||||| ||||||||  |||||| ||||||    
T  4872202 atttcattttaaccattcgatcgaatgtccattgtatctaa-agtgaaccgtcagcacctaattt 4872139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 6348163 - 6348207
Alignment:
Q  21 atcaaatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||    
T  6348163 atcaaatggtccctcaaataatttcaagttttcattttggtccca 6348207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 26629826 - 26629894
Alignment:
Q  48 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 116  Q
    ||||||||||| ||||||| | |  |||||||| ||||||||||||||||| ||||||| |||| ||||    
T  26629826 gttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgttaatcaa 26629894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 37882846 - 37882886
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  37882846 aatggtccctcaaataatttcaagttttcattttagtccca 37882886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 26376455 - 26376501
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 201  Q
    |||||||||||||||||||| |||| |||||||||||| ||| ||||    
T  26376455 tgattttaaccatttgattgcatgtacattgtatctaatagttaacc 26376501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 35348920 - 35348975
Alignment:
Q  130 tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattg 185  Q
    |||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  35348920 tttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattg 35348975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 45536444 - 45536355
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttc-acttttcatcatcttctctct 241  Q
    |||||||||||||| || |||||||| |||||||||||||  ||||||||  |||||  |||||| ||  | |||||||||||||||||||    
T  45536444 atttgattttaaccgttcgattgaatatccattgtatctat-agtgaaccgtcagcatctaattttttttatttttcatcatcttctctct 45536355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 4871497 - 4871597
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||  ||||| ||||||||||||| | | |||||||||| ||| ||| ||| ||||||||| || ||| |||| ||||  ||||||| |||| |||    
T  4871497 aattaattcaatggcccctcaactaattcccaattttcattttggtctcataagtcttaaaatcatcaatttagtccttcaatgtttgctccgttattca 4871596  T
Q  116 a 116  Q
    |    
T  4871597 a 4871597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 6349657 - 6349617
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  6349657 aatggtccctcaaataatttcaagttttcattttggtccca 6349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 27851036 - 27850996
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  27851036 aatggtccctcaaataatttcaagttttcattttggtccca 27850996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 3330695 - 3330923
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||||||||||||||||||||   |||||||||| ||| | | ||| ||||||||| ||||| ||||||||||||||||||| | || |||    
T  3330695 aattaatcaaatggtccctcaactaatttcccattttcattttggtctcttaagtcttaaaatcaccatttcggtccctcaacatttgctccgctattca 3330794  T
Q  116 atttggtctcacc------ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcac 209  Q
    |||||||||   |      ||| ||||||||||||       |||||||||||||| |||||||| |||| |||||||||| | ||||||||  ||||||    
T  3330795 atttggtctactcaattagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgttcattgtatct-atagtgaaccgtcagcac 3330893  T
Q  210 ataatttcttcacttttcatcatcttctctct 241  Q
     |||||  || | |||||||||||||||||||    
T  3330894 ttaatt--tttatttttcatcatcttctctct 3330923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 44376801 - 44376701
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||||||||||||||||||||||||||| ||||  |||| ||||||| | ||||||||||| ||||||||||||| ||| |||||||  |||||||    
T  44376801 aattaatcaaatggtccctcaactaatttcgaatttttgttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccattagtca 44376702  T
Q  116 a 116  Q
    |    
T  44376701 a 44376701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 44385668 - 44385568
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||||||||||||||||||||||||||| ||||  |||| ||||||| | ||||||||||| ||||||||||||| ||| |||||||  |||||||    
T  44385668 aattaatcaaatggtccctcaactaatttcgaatttttgttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccattagtca 44385569  T
Q  116 a 116  Q
    |    
T  44385568 a 44385568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 3332270 - 3332171
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||||||||||||||||||   |||||||||||| ||||||| | || |||||||| || |||||||||||||| ||||||| ||||||||    
T  3332270 aattaatcaaatggtccctcaactaattaacagttttcattttggtcccataaattctaaaatcatcaatttggtccctcaacgtttgctccgttagtca 3332171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 44372732 - 44372832
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||| | | ||||||| | |||||||||||||| || ||||||| |||| |||    
T  44372732 aattagtcaaatggtccctcaactaatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattca 44372831  T
Q  116 a 116  Q
    |    
T  44372832 a 44372832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 44381588 - 44381688
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||| | | ||||||| | |||||||||||||| || ||||||| |||| |||    
T  44381588 aattagtcaaatggtccctcaactaatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattca 44381687  T
Q  116 a 116  Q
    |    
T  44381688 a 44381688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 9081396 - 9081486
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 106  Q
    |||||||| |||||||||||||||||||||  ||||||||||| ||||||| |||  |||||||| || |||| ||||||||| |||||||    
T  9081396 aattaatccaatggtccctcaactaatttccggttttcattttggtcccataagtcataaaatcatcaatttgctccctcaacttttgctc 9081486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 17288239 - 17288118
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttctt---cacttt 225  Q
    ||||||||||||||||       || |||||||||| ||||||||| ||||||||||||| ||| ||||||||  |||||| |||||| ||   ||||||    
T  17288239 ttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccattgtatttaatagtgaaccgtcagcacctaattttttttccacttt 17288140  T
Q  226 tcatcatcttctctctgctcct 247  Q
    |||||||||||||||| |||||    
T  17288139 tcatcatcttctctcttctcct 17288118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 29589370 - 29589276
Alignment:
Q  29 gtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc 123  Q
    ||||||||||||||| | |||||||||||| |||| || ||| ||||||||| ||||||| ||||||||| ||||||| |||| | |||||||||    
T  29589370 gtccctcaactaattcccagttttcattttggtccaataagtcttaaaatcatcattttgctccctcaacttttgctccgttatttaatttggtc 29589276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 41515115 - 41515234
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||||||||| ||||||||| ||| ||| ||||||||  | |||| ||| ||| ||||||||||    
T  41515115 ttttttaatgtctaaagttttttatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaatttttttcacttttc 41515214  T
Q  228 atcatcttctctctgctcct 247  Q
    || ||||||||||| |||||    
T  41515215 ataatcttctctcttctcct 41515234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 16755874 - 16755974
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||  |||||||||||||||||||   ||||||  |||| ||||||| ||||| ||||||| ||||||| ||||||||| ||||||| |||| |||    
T  16755874 aattaatttaatggtccctcaactaattctcagtttttgttttggtcccataagtttaaaaatcatcattttgatccctcaacgtttgctccgttattca 16755973  T
Q  116 a 116  Q
    |    
T  16755974 a 16755974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 48312766 - 48312691
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtc 91  Q
    |||||||||||||||| |||||||||||   |||||||||||| ||||||| | | ||||||||| ||||||||||    
T  48312766 aattaatcaaatggtctctcaactaattcacagttttcattttggtcccataaatcttaaaatcatcattttggtc 48312691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 45721763 - 45721653
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttc 227  Q
    ||||||||||||||||       || |||||||||||||||||||| |||| |||||||||||| | ||||||  ||| || ||| ||| |||||||||     
T  45721763 ttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgttcattgtatctaataatgaaccgtcagtacctaatttttttcacttttt 45721664  T
Q  228 atcatcttctc 238  Q
    |||||||||||    
T  45721663 atcatcttctc 45721653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 43442844 - 43442672
Alignment:
Q  48 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtctcacc------ttttttaatgtct 141  Q
    |||||||| || ||||||| | |  |||||||| ||||||||||||||    ||||||| |||||||||||||||| |  |      | |||||||||||    
T  43442844 gttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttagtcaatttggtcccctccgttagtcttttaatgtct 43442745  T
Q  142 aaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataat 214  Q
    |||       ||||||||||||| ||||||||| |||||| |||||| ||||||||||||  |||||| ||||    
T  43442744 aaattttttgatttgattttaacaatttgattgcatgtccgttgtatttaacagtgaaccgtcagcacctaat 43442672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 10955968 - 10956079
Alignment:
Q  130 tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatt-tcttcacttttca 228  Q
    |||||||||||||||       |||||||||||||||||||||||| |||||||||  | ||| |||| |||   ||||| ||||| | |||||||| ||    
T  10955968 tttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgttagcacctaattgttttcactttcca 10956067  T
Q  229 tcatcttctctc 240  Q
    ||||||||||||    
T  10956068 tcatcttctctc 10956079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 35296812 - 35296706
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttca 228  Q
    ||||||||||||||||       || ||||||||||| |||||||| ||||||||| ||  ||  | ||| |||||||||| |||||| |||||||||||    
T  35296812 ttttttaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacatataa-tgagccaccagcacctaattttttcacttttca 35296714  T
Q  229 tcatcttc 236  Q
    ||||||||    
T  35296713 tcatcttc 35296706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 48312028 - 48312105
Alignment:
Q  17 attaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccct 94  Q
    ||||||| ||||||||||||||||||||  |||| |||||||  |||||| | | ||||||||| ||||||| |||||    
T  48312028 attaatctaatggtccctcaactaattttcagttctcattttgatcccataaatcttaaaatcatcattttgatccct 48312105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 28326387 - 28326315
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 201  Q
    ||||||||||||||||       || |||||||||||||||||||| ||||||||| ||| ||| ||||||||    
T  28326387 ttttttaatgtctaaattttttaatatgattttaaccatttgattgcatgtccattatatttaatagtgaacc 28326315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 32256499 - 32256458
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtcccat 66  Q
    ||||||||||||| ||||||| |||||||||||| |||||||    
T  32256499 aatggtccctcaaataatttcaagttttcattttggtcccat 32256458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 40811352 - 40811392
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  40811352 aatggtccctcaaataatttcaagttttcattttggtccca 40811392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 47456479 - 47456439
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  47456479 aatggtccctcaaataatttcaagttttcattttggtccca 47456439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 6047922 - 6048151
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||| |||||||||||||| | |||||| ||||| ||||||| |||  || ||| | ||||||||||| ||||| ||||||| || | |||    
T  6047922 aattaatcaaatgatccctcaactaattaccagttttaattttggtcccataagtcctataattatcattttggtcc-tcaacttttgctccgtcattca 6048020  T
Q  116 atttggtctc-acctt----ttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcaca 210  Q
    |||||||||| ||| |    |||||||| |||||       |||||||| |||||||||||||| | ||||||||||||||| ||||||||| || |||     
T  6048021 atttggtctctaccgtaggtttttaatgcctaaattttttgatttgattctaaccatttgattggaggtccattgtatctaatagtgaaccatcaacacc 6048120  T
Q  211 taatttcttcacttttcatcatcttctctct 241  Q
    |||||| ||  |||||| |||||||||||||    
T  6048121 taatttttttccttttcttcatcttctctct 6048151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 26803187 - 26803101
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatcttctctct 241  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||  || ||| |||||| ||||||||||||||||||||||||    
T  26803187 tgattttaaccatttgattgcatgtccattgtatttaacagtgaaccttcaccacctaattttttcacttttcatcatcttctctct 26803101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 6049537 - 6049430
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||||||||||||||||||||||| | |||||| ||||| ||| ||| |||  |||||||| ||||||||||||||||| ||||||  |||| |||    
T  6049537 aattaatcaaatggtccctcaactaattaccagtttttattttggtctcataagtcctaaaatcatcattttggtccctcaacgtttgctacgttattca 6049438  T
Q  116 atttggtc 123  Q
    ||||||||    
T  6049437 atttggtc 6049430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 40110623 - 40110537
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatcttctctct 241  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||  || ||| |||||| ||||||||||||||||||||||||    
T  40110623 tgattttaaccatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctctct 40110537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 3615250 - 3615357
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||||||||||||||||||   || |||| |||| ||||||| ||| | ||||||| ||||||||||||||||| |||||||  ||| ||     
T  3615250 aattaatcaaatggtccctcaactaattctcagatttcgttttggtcccataagtataaaaatcatcattttggtccctcaacgtttgctccattattcg 3615349  T
Q  116 atttggtc 123  Q
    ||||||||    
T  3615350 atttggtc 3615357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 52076534 - 52076641
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||||||||| ||||||||||||||   ||||||| |||| ||||||| |||   ||||||| ||||||||||||||||| ||||||| |||| ||     
T  52076534 aattaatcaaatgatccctcaactaattctcagttttcgttttggtcccattagtccaaaaatcatcattttggtccctcaacgtttgctccgttattcg 52076633  T
Q  116 atttggtc 123  Q
    ||||||||    
T  52076634 atttggtc 52076641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 3617610 - 3617510
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||| || ||| ||||||||||||   ||||||| |||| ||||||| ||||| ||||||| ||||||||||||||||| ||||||| |||| |||    
T  3617610 aattaatccaacggttcctcaactaattctcagttttcgttttggtcccataagtttaaaaatcatcattttggtccctcaacgtttgctccgttattca 3617511  T
Q  116 a 116  Q
    |    
T  3617510 a 3617510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 9226328 - 9226221
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||  |||||||||||||||||||   |||||||||||| ||||||| | ||||||||||| || ||||| |||| ||| ||| ||| |||| |||    
T  9226328 aattaattcaatggtccctcaactaattctcagttttcattttggtcccataaattttaaaatcatcaatttggccccttaacttttactccgttattca 9226229  T
Q  116 atttggtc 123  Q
    ||||||||    
T  9226228 atttggtc 9226221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 5611740 - 5611836
Alignment:
Q  27 tggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc 123  Q
    |||||| | |||||||||   ||||||||||| ||||||| | || |||||||| ||||||||| ||||||| ||| |||||||||| |||||||||    
T  5611740 tggtcctttaactaatttgttgttttcattttggtcccataatttgtaaaatcaacattttggtgcctcaacttttactctgttagtaaatttggtc 5611836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 26287865 - 26287790
Alignment:
Q  48 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc 123  Q
    ||||||||||| ||||||| | |  |||||||| ||||||||||||||||| ||| ||| ||||||||||||||||    
T  26287865 gttttcattttggtcccataattcgtaaaatcaacattttggtccctcaacttttactccgttagtcaatttggtc 26287790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 48528868 - 48528777
Alignment:
Q  152 atttgattttaa-ccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatt-tcttcacttttcatcatcttctctct 241  Q
    |||||||||||| ||||| ||||| ||||||||||||| ||| ||||||||  || ||| ||||| | ||||||||||||||||||||||||    
T  48528868 atttgattttaaaccattagattgcatgtccattgtatttaatagtgaaccgtcaacacctaattattttcacttttcatcatcttctctct 48528777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 17190556 - 17190630
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggt 90  Q
    |||||||||||| |||| |||||||||||  ||||||||||||  ||| || ||||||||||||| |||||||||    
T  17190556 aattaatcaaattgtccttcaactaattttcagttttcattttgatcctataagttttaaaatcatcattttggt 17190630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 24516479 - 24516568
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaacc---accagcacataatttcttcacttttcatcatcttctctct 241  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||   |||| |   |  ||| ||||||||||||||||||||||||    
T  24516479 tgattttaaccatttgattgcatgtccattgtatttaacggtgaaccttgaccatctattttttttttcacttttcatcatcttctctct 24516568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 40533598 - 40533484
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatt--tcttcactttt 226  Q
    ||||||||||||||||       || |||||||||||||| ||||| ||||||||||||  ||| ||||||||  | |||| |||||  | ||| |||||    
T  40533598 ttttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccgtcggcacctaatttattttcgctttt 40533499  T
Q  227 catcatcttctctct 241  Q
    |||||||||||||||    
T  40533498 catcatcttctctct 40533484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 5611880 - 5611929
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 201  Q
    ||||||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  5611880 atttgattttaaccatttgattgtatgtccaatgtattttacagtgaacc 5611929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 26286426 - 26286515
Alignment:
Q  27 tggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 116  Q
    |||||||  |||||||||   ||||||||||| ||||||| | |  |||||||| ||| ||||||||||||| ||||||| |||||||||    
T  26286426 tggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaa 26286515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 52078207 - 52078126
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaa 97  Q
    |||||||| ||| |||||||||||||||   | ||||| |||| ||||||| ||||| ||||||| ||||||| ||||||||    
T  52078207 aattaatctaatagtccctcaactaattctcaattttctttttggtcccataagtttaaaaatcatcattttgatccctcaa 52078126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 5613166 - 5613098
Alignment:
Q  48 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 116  Q
    ||||||||||| ||||||| | |  |||||||| ||| ||||||||||||| ||||||| |||||||||    
T  5613166 gttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaa 5613098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 27556273 - 27556373
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    ||||||| ||||||||||| ||||||||   |||||| ||||| ||||||| ||| ||||||||| || |   |||||||||| ||||||| |||| |||    
T  27556273 aattaattaaatggtcccttaactaattctcagtttttattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctccgttattca 27556372  T
Q  116 a 116  Q
    |    
T  27556373 a 27556373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 12667246 - 12667156
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa--tttcttcacttttcatcatcttctctct 241  Q
    |||||||||||| |||||||||| ||||| ||||||| |  |||||||||  |||||| |||  ||| ||||||||||||  ||||||||||    
T  12667246 atttgattttaatcatttgattgcatgtctattgtat-ttccagtgaaccgtcagcacttaattttttttcacttttcattgtcttctctct 12667156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 26287747 - 26287711
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtat 188  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  26287747 atttgattttaaccatttgattgtatgtccaatgtat 26287711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 50444802 - 50444762
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  50444802 aatggtccctcaaataatttcaaattttcattttagtccca 50444762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 52627527 - 52627567
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  52627527 aatggtccctcaaataatttcaagttttcattttggtccca 52627567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 23233809 - 23233709
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||||||||||||||||||||||| | | |||||||||| ||||||| ||| ||||||||| ||||||||||||||||| ||||||| |||| |||    
T  23233809 aattaatcaaatggtccctcaactaattacaaattttcattttggtcccataagtcttaaaatcatcattttggtccctcaacttttgctccgttattca 23233710  T
Q  116 a 116  Q
    |    
T  23233709 a 23233709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 23231543 - 23231625
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaac 98  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||| ||||||||| |||||||||||||||||    
T  23231543 aattaatcaaatggtccctcaactaattacgagtttttattttggtcccataagtcttaaaatcatcattttggtccctcaac 23231625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 4919975 - 4920062
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa--tttcttcacttttcatcatcttctctct 241  Q
    ||||||||||| |||||||| ||||||||| || || | ||||||||| |||||  |||  ||| |||| |||||||||||||||||||    
T  4919975 tgattttaaccgtttgattgcatgtccattatacct-atagtgaaccatcagcatctaatttttgttcatttttcatcatcttctctct 4920062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 42368279 - 42368230
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccacc 204  Q
    ||||||||||| |||||||| | ||||| ||||| |||||||||||||||    
T  42368279 tgattttaaccgtttgattgtaagtccactgtatataacagtgaaccacc 42368230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 25569916 - 25570000
Alignment:
Q  157 attttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatcttctctct 241  Q
    |||||||||| ||||||| ||||| || |||| ||| ||||||||| |||||| | |||| |  | ||||| |||||||||||||    
T  25569916 attttaaccacttgattgcatgtctatagtatttaagagtgaaccatcagcacttgatttttatagttttcttcatcttctctct 25570000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 241
Target Start/End: Complemental strand, 10737028 - 10736819
Alignment:
Q  39 taatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtctcacct------ttt 132  Q
    |||||||  ||||||||||| ||||||| | |  |||||||| ||||||||||||||    ||||||| |||| ||||||||||| |  |       |||    
T  10737028 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggtcccctccgttaacttt 10736929  T
Q  133 ttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttcatca 231  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||  || ||| ||| ||| |||||||| |||||    
T  10736928 ttaatgtctaaaatttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaaccgtcaacacttaatttttttcactttccatca 10736829  T
Q  232 tcttctctct 241  Q
    ||||||||||    
T  10736828 tcttctctct 10736819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 9220573 - 9220473
Alignment:
Q  16 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||  ||||||||||||||||||||| ||||||||||||  |||||| ||| || ||||||| |||||||||||||||| |||||||||||| |||    
T  9220573 aattaattcaatggtccctcaactaatttccagttttcattttgttcccataagtcttgaaatcagaattttggtccctcaacttttgctctgttattca 9220474  T
Q  116 a 116  Q
    |    
T  9220473 a 9220473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 8188197 - 8188098
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttca 228  Q
    ||||||||||||||||       || |||||||||||||||||||| ||||||||| ||| |||  |||||||| || ||| |||||| |||||||||||    
T  8188197 ttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtccattatatttaatggtgaaccatcaacacctaattt-ttcacttttca 8188099  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 4124902 - 4124990
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatt--tcttcacttttcatcatcttctc 238  Q
    |||| |||||||||||||||||| || |||||||||| ||| ||||||||  |||||| | |||  | |||| ||||||||||||||||    
T  4124902 atttaattttaaccatttgattgtatatccattgtatttaatagtgaaccgtcagcacctgattaattttcatttttcatcatcttctc 4124990  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 9170858 - 9170774
Alignment:
Q  157 attttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttcatcatcttctctct 241  Q
    |||||||||||||||||| ||||||||| ||||| |  || ||||| |||||| ||| ||| ||||||||||||||||||| ||||    
T  9170858 attttaaccatttgattgcatgtccattatatct-atggtaaaccatcagcacttaatttttttcacttttcatcatcttccctct 9170774  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 9219298 - 9219370
Alignment:
Q  129 ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 201  Q
    ||||||||||||||||       |||||||||||||| |||||||| |||| |||||||| ||| ||||||||    
T  9219298 ttttttaatgtctaaaattttttatttgattttaaccgtttgattgcatgttcattgtatttaatagtgaacc 9219370  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 1103939 - 1103849
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatt-tcttcacttttcatcatcttctctct 241  Q
    ||||||||||||||||| ||||  ||| ||||||||| ||| ||| ||||  || ||| ||||| | || |||||||||||||||||||||    
T  1103939 atttgattttaaccattagattacatgcccattgtatttaatagttaaccgtcaacacctaattatttttacttttcatcatcttctctct 1103849  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 325289 - 325249
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtccca 65  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  325289 aatggtccctcaaataatttcaagttttcattttggtccca 325249  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 18242414 - 18242217
Alignment:
Q  25 aatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtct 124  Q
    ||||||||||||||||||||  | |||| ||| | ||||||| ||| ||||||||| || |||||||||||||| |||||||  ||| ||||||| |||     
T  18242414 aatggtccctcaactaatttttaatttttattctggtcccataagtcttaaaatcatcaatttggtccctcaacttttgctccattattcaatttcgtcc 18242315  T
Q  125 cacc------ttttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataattt 216  Q
    |  |      ||||||||||||| ||       |||| |||||||||||||||||| ||||||||||||| | | ||||||||| || ||| ||||||    
T  18242314 cctccgttagttttttaatgtcttaaatttttaatttaattttaaccatttgattgcatgtccattgtattttatagtgaaccatcatcacctaattt 18242217  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 18240418 - 18240502
Alignment:
Q  32 cctcaactaatttcgagttttcattttagtcccatgagttttaaaa-tcagcattttggtccctcaacatttgctctgttagtca 115  Q
    |||||||||||||  ||||||||||||  ||||||  || |||||| ||| || |||||||||||||| ||||||||||||||||    
T  18240418 cctcaactaattttcagttttcattttgatcccatatgtcttaaaaatcatcaatttggtccctcaacttttgctctgttagtca 18240502  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 11968438 - 11968349
Alignment:
Q  152 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcttcacttttcatcatcttctctct 241  Q
    ||||||||||||||||||||||| ||||| ||| ||| | ||| ||||||| || ||  ||| ||| ||||||||||||||||||||||||    
T  11968438 atttgattttaaccatttgattgcatgtctattatattttaca-tgaaccatcaacatctaatttttttcacttttcatcatcttctctct 11968349  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 29675622 - 29675683
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataattt 216  Q
    |||||||||||| | ||||| | ||||||||||||||| |||| |||| || ||||||||||    
T  29675622 tgattttaaccactggattgcaggtccattgtatctaatagtgcaccatcaccacataattt 29675683  T

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Target: scaffold0219 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 7044 - 7124
Alignment:
Q  157 attttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcttcacttttcatcatcttct 237  Q
    ||||||||| |||||||| ||||||||| ||| ||| ||||||||  || ||| |||||| ||| ||||||||||||||||    
T  7044 attttaaccgtttgattgcatgtccattatatttaatagtgaaccgtcaacacctaattttttcgcttttcatcatcttct 7124  T

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Target: scaffold0687 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 6534 - 6497
Alignment:
Q  155 tgattttaaccatttgattgaatgtccattgtatctaa 192  Q
    |||||||||||||||||||  |||||||||||||||||    
T  6534 tgattttaaccatttgattctatgtccattgtatctaa 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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