View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4244_high_19 (Length: 215)
Name: NF4244_high_19
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 1743962 - 1743782
Alignment:
| Q |
18 |
attatatcaaatatgttggtgaaagattttccacaagaatgttgggaatcaatcttcaaactccttgaccaaggacatgatttggagtctgtttctatgg |
117 |
Q |
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| T |
1743962 |
attatatcaaatatgttattgaaagattttcctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggagtctgtttctatgg |
1743863 |
T |
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| Q |
118 |
tctgcaagaaattcctttcctttacaaaccgagttaaattctctctaacaatacatgattccactgttttattcctttctc |
198 |
Q |
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| T |
1743862 |
tctgcaagaaattcctttccattacaaaccaagtgaaattttctttaacaatacatgattccactattctattcctttctc |
1743782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 2006422 - 2006596
Alignment:
| Q |
20 |
tatatcaaatatgttggtgaaagattttccacaagaatgttgggaatcaatcttcaaactccttgaccaaggacatgatttggagtctgtttctatggtc |
119 |
Q |
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|||||||||||| || |||||||||||||| ||||||||||||||||||||||| | | |||||| ||||||| |||||||||||||||||||||||||| |
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| T |
2006422 |
tatatcaaatatattagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggtc |
2006521 |
T |
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| Q |
120 |
tgcaagaaattcctttcctttacaaaccgagttaaattctctctaacaatacatgattccactgttttattcctt |
194 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||| ||||||| |
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| T |
2006522 |
tgcaagaaattcctttccattacaaaccgagttaaagcatctctaacagtacatgatcccactgttccattcctt |
2006596 |
T |
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