View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4244_high_7 (Length: 397)
Name: NF4244_high_7
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 3361831 - 3361453
Alignment:
| Q |
17 |
actttgctggtgttagtttcctatgatggtaactactctgagagtcttgagtgccattatgattactttcactgtggatatggtatttattcttatactt |
116 |
Q |
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| T |
3361831 |
actttgctggtgttagtttcctatgatggtaactactctgag--tcttgagtgccactatgattactttcactgtggatatggtatttattcttatactt |
3361734 |
T |
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| Q |
117 |
tctctccctctattttgtttggccctttttaggtgtctctatgttggtacttcgtatttctctgtttgttagttgagattttggtatccgaaccatagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||| |
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| T |
3361733 |
tctctccctctattttgtttggccctttttaggtgtctctatgttggtacttggtatttttttgtttgttagttgagatttcggtatccgaaccatagga |
3361634 |
T |
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| Q |
217 |
ctgactaattcgaggagataaatcccaccgtgtatgttgataatttactgtagctttctgttgagttttgcagatgagattgaagaacatgccttgaatg |
316 |
Q |
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|||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361633 |
ctgactaattcgaggagacaaattcaaccgtctatgttgataatttactgtagctttctgttgagttttgcagatgagattgaagaacatgccttgaatg |
3361534 |
T |
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| Q |
317 |
tggaatcatgtgttcaagttttgagaattttgaacaccaaggcagatgttgaaattgagaaactcgaaaatgatctcttgt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361533 |
tggaatcatgtgttcaagttttgagaattttgaacaccaaggcagatgttgaaattgagaaactcgaaaatgatctcttgt |
3361453 |
T |
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