View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4244_high_8 (Length: 389)

Name: NF4244_high_8
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4244_high_8
NF4244_high_8
[»] chr8 (3 HSPs)
chr8 (8-374)||(2027211-2027574)
chr8 (37-89)||(1951380-1951432)
chr8 (144-190)||(1951467-1951513)
[»] chr3 (2 HSPs)
chr3 (311-371)||(26380686-26380746)
chr3 (328-374)||(15102404-15102450)
[»] chr7 (4 HSPs)
chr7 (230-290)||(11505809-11505865)
chr7 (230-290)||(11512509-11512565)
chr7 (298-330)||(18703902-18703934)
chr7 (249-289)||(18703978-18704018)
[»] scaffold0548 (1 HSPs)
scaffold0548 (328-374)||(10554-10600)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 2027574 - 2027211
Alignment:
Q  8 cgaagaatattaatatagaaattttgctaaaaagtaaagttgattagtcaaagtgatattttatggattggaacggttcatccactnnnnnnntatggac 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  2027574 cgaagaagattaatatagaaattttgctaaaaagtaaagttgattagtcaaagtgatattttatggattggaacggttcatccactgaaaaa-tatggac 2027476  T
Q  108 taataattaattccatgcaaagagaaaaatctaagctcaaataacaatcgtccccatagtcaagctttaatgtcactgtttgtttgtagaactttaacta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2027475 taataattaattccatgcaaagagaaaaatctaagctcaaataacaatcgtccccatagtcaagctttaatgtcactgtttgtttgtagaactttaacga 2027376  T
Q  208 ctagaaatttcgtttacaaaacaaacaagcttcatttccctaaaaataacagtttgacccatgtttgtatttcactcaaaaaatcaaatcttcagttcaa 307  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  2027375 ctagaaatttcgattacaaaacaaacaagcttcatttccctaaaa--aacagtttaacccatgtttgtatttcactcaaaaaatcaaatcttcagttgaa 2027278  T
Q  308 agtttcaccttttatgaaaccagtgaacaaaatccttatacagctgaagacaaaacaaaatcattat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2027277 agtttcaccttttatgaaaccagtgaacaaaatccttatacagctcaagacaaaacaaaatcattat 2027211  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 1951380 - 1951432
Alignment:
Q  37 aaaagtaaagttgattagtcaaagtgatattttatggattggaacggttcatc 89  Q
    |||||| || ||||||||| ||||||||| |||||||||||||||||||||||    
T  1951380 aaaagttaaattgattagtgaaagtgatactttatggattggaacggttcatc 1951432  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 1951467 - 1951513
Alignment:
Q  144 tcaaataacaatcgtccccatagtcaagctttaatgtcactgtttgt 190  Q
    |||||||||| |||| |||||||||||||||| |||||||| |||||    
T  1951467 tcaaataacagtcgttcccatagtcaagctttgatgtcactctttgt 1951513  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 26380686 - 26380746
Alignment:
Q  311 ttcaccttttatgaaaccagtgaacaaaatccttatacagctgaagacaaaacaaaatcat 371  Q
    ||||||||||||||||||||||| ||||||||||||| | || || |||||||||||||||    
T  26380686 ttcaccttttatgaaaccagtgagcaaaatccttataaaactcaacacaaaacaaaatcat 26380746  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 15102404 - 15102450
Alignment:
Q  328 cagtgaacaaaatccttatacagctgaagacaaaacaaaatcattat 374  Q
    |||||||||||||| ||||||| || |||||||||||||||| ||||    
T  15102404 cagtgaacaaaatcattatacatctcaagacaaaacaaaatcgttat 15102450  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 11505809 - 11505865
Alignment:
Q  230 aaacaagcttcatttccctaaaaataacagtttgacccatgtttgtatttcactcaaaaaa 290  Q
    |||||||||||||||||    ||| ||||||||||||||||||||||||| ||||||||||    
T  11505809 aaacaagcttcatttcc----aaaaaacagtttgacccatgtttgtatttaactcaaaaaa 11505865  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 11512509 - 11512565
Alignment:
Q  230 aaacaagcttcatttccctaaaaataacagtttgacccatgtttgtatttcactcaaaaaa 290  Q
    |||||||||||||||||    ||| ||||||||||||||||||||||||| ||||||||||    
T  11512509 aaacaagcttcatttcc----aaaaaacagtttgacccatgtttgtatttaactcaaaaaa 11512565  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 18703934 - 18703902
Alignment:
Q  298 ttcagttcaaagtttcaccttttatgaaaccag 330  Q
    |||||||||||| ||||||||||||||||||||    
T  18703934 ttcagttcaaagcttcaccttttatgaaaccag 18703902  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 18704018 - 18703978
Alignment:
Q  249 aaaaataacagtttgacccatgtttgtatttcactcaaaaa 289  Q
    ||||| || |||| |||||||||||||||||||||||||||    
T  18704018 aaaaaaaaaagttcgacccatgtttgtatttcactcaaaaa 18703978  T

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Target: scaffold0548 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 10600 - 10554
Alignment:
Q  328 cagtgaacaaaatccttatacagctgaagacaaaacaaaatcattat 374  Q
    |||||||||||||| ||||||| || |||||||||||||||| ||||    
T  10600 cagtgaacaaaatcattatacatctcaagacaaaacaaaatcgttat 10554  T

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