View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4244_low_10 (Length: 386)
Name: NF4244_low_10
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 33778323 - 33777962
Alignment:
| Q |
18 |
atgtagctcatctcaatgctcactcttcggttcacatggttgcagtgacnnnnnnntatgtggccgttcaccttacaacactgtaacaggtgtgtctaca |
117 |
Q |
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| T |
33778323 |
atgtagctcatctcaatgctcactcttcggttcacatggttgcagtgacaaaaaaatatgtggccgttcaccttacaacattgtaacaggtgtgtccaca |
33778224 |
T |
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| Q |
118 |
tctggtgacattcagtcagatattgtttcagttcaatccacaaatggaaactattctggtagatttgtttctgttcctaactttctctttatttgtggct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33778223 |
tctggtgacattcagtcagatattgtttcagttcaatccacaaatggaaactattctggtagatttgtttctgttcctaactttctctttatttgtggct |
33778124 |
T |
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| Q |
218 |
ctaatgttgtacaaaatggtcttgctaagggtgtcaaaggtatggctggtcttggaaggactaaagtgtcacttccttcacagttttcatcagcttttag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33778123 |
ctaatgttgtacaaaatggtcttgctaagggtgtcaaaggtatggctggtcttggaaggactaaagtgtcacttccttcacagttttcatcagcttttag |
33778024 |
T |
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| Q |
318 |
tttcaagaataaatttgcaatttgtttaggtactcaaaatggtgtacttttctttgatgatg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33778023 |
tttcaagaataaatttgcaatttgtttaggtactcaaaatggtgtacttttctttggtgatg |
33777962 |
T |
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