View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4244_low_14 (Length: 282)
Name: NF4244_low_14
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 48966384 - 48966125
Alignment:
| Q |
12 |
catcatca-aactccctctaacgccaacttcctttccaaatctcttccctccatagatcctttcttcctccgcattcacaccgttgattttccctaccaa |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48966384 |
catcatcacaactccctctaacgccaacttcctttccaaatctcttccctccatagatcctctcttcctccgcattcacaccgttgatttcccctaccaa |
48966285 |
T |
|
| Q |
111 |
caagttggtctcccctccggtgtcgaatccatgtccaacacccctgatcttgcctcctccggcaaactatacgctggagcaatgctcctccaagaaccaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48966284 |
caagttggtctcccctccggtgtcgaatccatgtccaacacccctgatcttgcctcctccggcaaactatacgcaggagcaatgctcctccaagaaccaa |
48966185 |
T |
|
| Q |
211 |
ttcagtatttcatggagaaagatccacctgactgtatcattggtgacttcttgtaccctt |
270 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48966184 |
ttcagaatttcatggagaaagatccacctgactgtatcattggtgacttcttgtaccctt |
48966125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 48963159 - 48963098
Alignment:
| Q |
189 |
gcaatgctcctccaagaaccaattcagtatttcatggagaaagatccacctgactgtatcat |
250 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
48963159 |
gcaatgctcctccacggaccaattcaggatttcatggagaaggatccacctgactgcatcat |
48963098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 48959018 - 48958963
Alignment:
| Q |
189 |
gcaatgctcctccaagaaccaattcagtatttcatggagaaagatccacctgactg |
244 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
48959018 |
gcaatgctcctccgtgaacctattcacgatttcatggagaaggatccacctgactg |
48958963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 13441077 - 13441016
Alignment:
| Q |
189 |
gcaatgctcctccaagaaccaattcagtatttcatggagaaagatccacctgactgtatcat |
250 |
Q |
| |
|
|||||||||||||| | | | ||| || |||||||||||||||||||||| || |||||||| |
|
|
| T |
13441077 |
gcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcat |
13441016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University