View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4244_low_20 (Length: 227)
Name: NF4244_low_20
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 38056256 - 38056473
Alignment:
| Q |
1 |
ctccaagttagggttctaatagtcttccttcgtcttaatacttcttcatcttctgcttcttgcaagattgctttgttgaaggtccttctttcaatttctt |
100 |
Q |
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| T |
38056256 |
ctccaaattagggttctaatattcttccttcgtcttaattcttcttcatcttctgcttctttcaatatttcttttttgaaggtccttcttttaatttctt |
38056355 |
T |
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| Q |
101 |
gttcatcagctaatctgcacaaagcaaggccgcaaaa-ttttctttgacaaacgtgaacta-----caaattatagaaacagaaacaaaaagatactacc |
194 |
Q |
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|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38056356 |
gttcattagctaatctgcacaaagcaagaccgcaaaatttttctttgacaaacgtgaactacaaatcaaattatagaaacagaaacaaaaagatactacc |
38056455 |
T |
|
| Q |
195 |
aaatatgtacgtgcatat |
212 |
Q |
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|||||||||||||||||| |
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| T |
38056456 |
aaatatgtacgtgcatat |
38056473 |
T |
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