View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4244_low_3 (Length: 465)

Name: NF4244_low_3
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4244_low_3
NF4244_low_3
[»] chr7 (2 HSPs)
chr7 (19-458)||(240302-240741)
chr7 (242-281)||(4587679-4587718)
[»] chr6 (3 HSPs)
chr6 (237-280)||(3634199-3634242)
chr6 (235-280)||(17352547-17352592)
chr6 (237-280)||(22259516-22259559)
[»] chr8 (2 HSPs)
chr8 (238-280)||(33053638-33053680)
chr8 (239-268)||(13109637-13109666)
[»] chr2 (4 HSPs)
chr2 (239-280)||(35406132-35406173)
chr2 (242-280)||(20515848-20515886)
chr2 (239-281)||(31000194-31000236)
chr2 (242-280)||(31483239-31483277)
[»] scaffold0211 (1 HSPs)
scaffold0211 (238-280)||(24760-24802)
[»] chr4 (3 HSPs)
chr4 (238-276)||(21823393-21823431)
chr4 (238-280)||(41635687-41635729)
chr4 (238-280)||(42454556-42454598)
[»] scaffold0003 (1 HSPs)
scaffold0003 (242-281)||(89531-89570)
[»] chr3 (2 HSPs)
chr3 (238-281)||(1085483-1085526)
chr3 (239-268)||(17132472-17132501)
[»] chr5 (2 HSPs)
chr5 (242-280)||(24308816-24308854)
chr5 (242-280)||(24364471-24364509)
[»] chr1 (1 HSPs)
chr1 (239-280)||(24115511-24115552)


Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 240302 - 240741
Alignment:
Q  19 tttaagctttcaccatttatcaatcttgcattgtaaatcttgccatccatgaattaatgatgtttcaccctttcttttcaattcataacataaattaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240302 tttaagctttcaccatttatcaatcttgcattgtaaatcttgccatccatgaattaatgatgtttcaccctttcttttcaattcataacataaattaata 240401  T
Q  119 gaatagttagattttcctttttatgttacttaggctgatnnnnnnnnctaattaatgatacacaccatcttcctcactttcttaatgcctcagagtgatt 218  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240402 gaatagttagattttcctttttatgttacttaggctgataaaaaaaactaattaatgatacacaccatcttcctcactttcttaatgcctcagagtgatt 240501  T
Q  219 tctcttgaatctaccaaatatttaaaactagtcttattgtttaccaaaaataccggtaaacaccaagcttcctttgagatagtttcatcctcaaccttct 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  240502 tctcttgaatttaccaaatatttaaaactagtcttattgtttaccaaaaataccggtaaacacgaagcttcctttaagatagtttcatcctcaaccttct 240601  T
Q  319 caaacatagaattacccacatattgatggatgagggttacaacttgttgtatttcttctttatatttgacaattcttctttctcattgagacaaactttc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  240602 caaacatagaattacccacatattgatggatgagggttacaacttgttgtatttcttctttatatttgacaattcttctttctcattgaaacaaactttc 240701  T
Q  419 ttcatcttatggcttctcatagcctttctctataatctct 458  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  240702 ttcatcttatggcttctcatagcctttctctataatctct 240741  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 4587718 - 4587679
Alignment:
Q  242 aaaactagtcttattgtttaccaaaaataccggtaaacac 281  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  4587718 aaaactagtcatattgtttaccaaaaacaccggtaaacac 4587679  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 3634242 - 3634199
Alignment:
Q  237 tatttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  3634242 tatttaaaactagtcttattgtttaccaaaaacaccggtaaaca 3634199  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 17352592 - 17352547
Alignment:
Q  235 aatatttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||    
T  17352592 aataattaaaactagtcctattgtttaccaaaaatacaggtaaaca 17352547  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 22259516 - 22259559
Alignment:
Q  237 tatttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    |||||||||||||||||||||||||| ||||| | |||||||||    
T  22259516 tatttaaaactagtcttattgtttacaaaaaacagcggtaaaca 22259559  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 33053680 - 33053638
Alignment:
Q  238 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  33053680 atttaaaactagtcttattgtttaccaaaaacaccggtaaaca 33053638  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 13109666 - 13109637
Alignment:
Q  239 tttaaaactagtcttattgtttaccaaaaa 268  Q
    ||||||||||||||||||||||||||||||    
T  13109666 tttaaaactagtcttattgtttaccaaaaa 13109637  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 35406132 - 35406173
Alignment:
Q  239 tttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  35406132 tttaaaactagtcttattgtttaccaaaaaaaccggtaaaca 35406173  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 20515848 - 20515886
Alignment:
Q  242 aaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  20515848 aaaactagtcttattgtttaccaaaaacaccggtaaaca 20515886  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 31000194 - 31000236
Alignment:
Q  239 tttaaaactagtcttattgtttaccaaaaataccggtaaacac 281  Q
    |||||||||| ||||||||||||||||||| || |||||||||    
T  31000194 tttaaaactaatcttattgtttaccaaaaacacaggtaaacac 31000236  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 31483277 - 31483239
Alignment:
Q  242 aaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  31483277 aaaactagtcttcttgtttaccaaaaataccggcaaaca 31483239  T

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Target: scaffold0211 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 24802 - 24760
Alignment:
Q  238 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  24802 atttaaaactagtcttattgtttatcaaaaatatcggtaaaca 24760  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 21823431 - 21823393
Alignment:
Q  238 atttaaaactagtcttattgtttaccaaaaataccggta 276  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21823431 atttaaaactagtcttattgtttaccaaaaacaccggta 21823393  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 41635687 - 41635729
Alignment:
Q  238 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    
T  41635687 atttaaaactagtcttatggttttccaaaaacaccggtaaaca 41635729  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 42454598 - 42454556
Alignment:
Q  238 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||    
T  42454598 atttaaaactaatcttattgtttaccacaaacaccggtaaaca 42454556  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 89570 - 89531
Alignment:
Q  242 aaaactagtcttattgtttaccaaaaataccggtaaacac 281  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  89570 aaaactagtcttattgtttactaaaaacaccggtaaacac 89531  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 1085526 - 1085483
Alignment:
Q  238 atttaaaactagtcttattgtttaccaaaaataccggtaaacac 281  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||    
T  1085526 atttaaaattagttttattgtttaccaaaaacaccggtaaacac 1085483  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 17132501 - 17132472
Alignment:
Q  239 tttaaaactagtcttattgtttaccaaaaa 268  Q
    ||||||||||||||||||||||||||||||    
T  17132501 tttaaaactagtcttattgtttaccaaaaa 17132472  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 24308854 - 24308816
Alignment:
Q  242 aaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24308854 aaaactagttttcttgtttaccaaaaataccggtaaaca 24308816  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 24364471 - 24364509
Alignment:
Q  242 aaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24364471 aaaactagttttcttgtttaccaaaaataccggtaaaca 24364509  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 24115511 - 24115552
Alignment:
Q  239 tttaaaactagtcttattgtttaccaaaaataccggtaaaca 280  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  24115511 tttaaaactagttttattgtttaccaaaaacaccgataaaca 24115552  T

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