View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4244_low_5 (Length: 414)
Name: NF4244_low_5
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 169 - 392
Target Start/End: Original strand, 17802950 - 17803178
Alignment:
| Q |
169 |
aaatcaaatctttctttaatttgacagccaacagatattagcataaaattacaaaacgcatattaaaggttacaacagaaatctgattgcctccatagca |
268 |
Q |
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| T |
17802950 |
aaatcaaatctttctttaatttggcagccaacagatattaacataaaattacaaaatgcata---aaggcgacaacagaaatccgactgcctctatagca |
17803046 |
T |
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| Q |
269 |
gacaatttatttgattatgttaaaattagttaatttggtgtttgcatcttcattatatgcatgtgtgtttgatgcata--------tacccctaaattac |
360 |
Q |
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| T |
17803047 |
gacattttatttgattttgttaaaattagttaatttggtgtttgcatctttattatattcatgtgtgtttgatgcatacatgttggtacccctaaattac |
17803146 |
T |
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| Q |
361 |
gatgggaggttagcagcaaaataacacaaacc |
392 |
Q |
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| T |
17803147 |
gatgggagattagtggcaaaatatcacaaacc |
17803178 |
T |
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Back To:
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Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 14993846 - 14994015
Alignment:
| Q |
14 |
agcacagacacgaaacccgcaactgctactatccatatttttccattaacggattattattttgaatgacaagaaaagtttaacataaatacacatgtaa |
113 |
Q |
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| T |
14993846 |
agcacaaacacgaaacccgcaactgctactacccatatttttccattaaca---tattattttgaatgacaagaaaagtttaacataaatacacatgtaa |
14993942 |
T |
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| Q |
114 |
ggagtnnnnnnncaaactgtaagtcaaattaaatttaaggaatctcccaaaactaaaatcaaatctttcttta |
186 |
Q |
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| T |
14993943 |
ggagtaaaaaaataaattgaaagtcaaattgaatttaaggaatctcccaaaactaaaatcaaatcttttttta |
14994015 |
T |
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