View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4244_low_9 (Length: 387)
Name: NF4244_low_9
Description: NF4244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4244_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 11928736 - 11929095
Alignment:
| Q |
8 |
gacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttctcaaaacaatattgttttgtcatctcaagtctatcca |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||| |
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| T |
11928736 |
gacattatcaacttttcaattattgtcaaatcttagtcttaatcttcaagagcttcatctttctcaaaacaatattgttttgtcatctcatgtgtatcca |
11928835 |
T |
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| Q |
108 |
aacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctcaactttagcaccaaattgcaagagcttt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
11928836 |
aacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctaacctttagcaccaaattgcaagagcttt |
11928935 |
T |
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| Q |
208 |
atctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttcagttgtgaactcttcatcttcccttctcatccttgatgtttcctcaaa |
307 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||| | | || | || |||||||||||||||||||||| | |||||||| |
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| T |
11928936 |
atctaacaagttgcagtcttacaaataaaagttttcttgtgtcatctacttccactttcaaatttttatcttcccttctcatccttgatctctcctcaaa |
11929035 |
T |
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| Q |
308 |
tatgttgagatcatcagaaatatttttaggggcttttaactttaccactaatcttcatag |
367 |
Q |
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| T |
11929036 |
tttgttgagatcatcagaagtgtttttctggatttttaactttactaccgatcttcatag |
11929095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 11852519 - 11852160
Alignment:
| Q |
8 |
gacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttctcaaaacaatattgttttgtcatctcaagtctatcca |
107 |
Q |
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| T |
11852519 |
gacatcatcagcttttcaattcttgtcaaatattagtcttaatcttcaagagcttcatctttctggaaacaatgttgttttgtcatctcatttctatcca |
11852420 |
T |
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| Q |
108 |
aacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctcaactttagcaccaaattgcaagagcttt |
207 |
Q |
| |
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||| ||||||||||||||||||||||||||||| | |||||| | |||||| ||||||| |||| || || |||||| ||||||||||||||||| |
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| T |
11852419 |
aactttccttctcttgtcatccttgacctctcaaataataatatttcatcatcccaatttccaggtatccgcagttttagctccaaattgcaagagcttc |
11852320 |
T |
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| Q |
208 |
atctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttcagttgtgaactcttcatcttcccttctcatccttgatgtttcctcaaa |
307 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11852319 |
atctaacaaattgcatgcttacagataaaagttttcttgtgtcatctacttcagttgtgaactcttcatcttcccttctcatccttgatgtttcctcaaa |
11852220 |
T |
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| Q |
308 |
tatgttgagatcatcagaaatatttttaggggcttttaactttaccactaatcttcatag |
367 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11852219 |
tatgttgagatcatcggaaatatttttatgggcttttaactttaccactaatcttcatag |
11852160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 11833255 - 11832896
Alignment:
| Q |
8 |
gacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttctcaaaacaatattgttttgtcatctcaagtctatcca |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||| ||||||| |||||| | ||||||| |||||||| |
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| T |
11833255 |
gacatcatcaacttttcaattcttgtcaaatattagtcttaatcttcaagagcttcgtctttctggaaacaatgttgtttggccatctcatttctatcca |
11833156 |
T |
|
| Q |
108 |
aacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctcaactttagcaccaaattgcaagagcttt |
207 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |||||| | |||||| ||||||| |||| || || |||||| |||||||||||||||||| |
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| T |
11833155 |
aactttccttctcttgtcatccttgacctctcaactaataatatttcatcatcccaatttccaggtatccgcagttttagctccaaattgcaagagcttt |
11833056 |
T |
|
| Q |
208 |
atctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttcagttgtgaactcttcatcttcccttctcatccttgatgtttcctcaaa |
307 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11833055 |
atctagaaaattgcatgcttacagataaaagttttcttgtgtcatctacttcagttgtgaactcttcatcttcccttctcatccttgatgtttcctcaaa |
11832956 |
T |
|
| Q |
308 |
tatgttgagatcatcagaaatatttttaggggcttttaactttaccactaatcttcatag |
367 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11832955 |
tatgttgagatcatcggaaatatttttatgggcttttaactttaccactaatcttcatag |
11832896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 11963026 - 11963405
Alignment:
| Q |
8 |
gacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttctcaaaacaatattgttttgtcatctcaagtctatcca |
107 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||| |
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| T |
11963026 |
gacatcatcagcttttcaattcttgtcaaatattagtcttaatcttcaagagcttgatctttctgaaaacaatgttgttttgtcatctcatttctatcca |
11963125 |
T |
|
| Q |
108 |
aacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctcaactttagcaccaaattgcaagagcttt |
207 |
Q |
| |
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||| ||||||||||||||||||||||||||||| | |||||| | |||||| ||||||| |||| || || |||||| | ||||||||| |||||| |
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| T |
11963126 |
aactttccttctcttgtcatccttgacctctcatataataatatttcatcatcccaatttccaggtatccgcagttttagctcgaaattgcaaaagcttt |
11963225 |
T |
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| Q |
208 |
atctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttcagttgtgaactcttcatcttcccttctcatccttgatgtttcctcaaa |
307 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
11963226 |
atctaacaagttgcatgcttacagataaaagttttcttgtgtcatccacttcagttgtgaactcttcatcttcccttctcatcctcgatctttcctcaaa |
11963325 |
T |
|
| Q |
308 |
tatgttgagatcatcagaaatatttttaggggcttttaactttaccactaatcttcataggctttacctcaatggtaact |
387 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||| ||||| |||||||| |
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| T |
11963326 |
tatgttgagatcatcagaagtatttttatgggcttttaactttaccactaggcttcatagccttgacctcgttggtaact |
11963405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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