View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4245_high_1 (Length: 598)
Name: NF4245_high_1
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4245_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 36 - 515
Target Start/End: Complemental strand, 31614424 - 31613945
Alignment:
| Q |
36 |
cacaacactgacataaacactagacacaacaatgaaattgacatatttatacataatactttgaaaaataaattaatcgaatataatcacatgtattact |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31614424 |
cacaacactgacataaacactagacacaacaatgaaattgacatatttatacataatactttgaaaaataaattaatcgaatataatcacatgtgttact |
31614325 |
T |
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| Q |
136 |
atcatgtcagacacaactttcaataagaagtgtcagtgctacatagctcagtataagatttgaactataagtgatgcatgtaaatgatgtaacaaattat |
235 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31614324 |
atcgtgtcagacataactttcaataagaagtgtcagtgctacatagcccagtataagatttgaactataagtgatgcatgtgaatgatgtaacaaattat |
31614225 |
T |
|
| Q |
236 |
atatgatgtgaaattaataccatcatagtttttgtcactctctactaggtcatcacttttgtataggttaagtgtgataggagaagtggtcctgttttca |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31614224 |
atatgatgtgaaattaataccatcatagtttttgtcactctctactaggtcatcccttttgtataggttaagtgtgataggagaagtggtcctgttttca |
31614125 |
T |
|
| Q |
336 |
attggaacagaatctggaacagaatcagcatcttcttcttctgtttgaatttctgtttcatttgtttctgtctcaaaatctgaaacaattggtgacttgt |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31614124 |
attggaacagaatctggaacagaatcagcatcttcttcttctgtttgaatttctgtttcatttgtttctgtctcaaaatctgaaacaattggtgacttgt |
31614025 |
T |
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| Q |
436 |
gatgaacatacaaattttcagttgaaaaattttctactgaagaaaactcttcaatgaagctatcttgaggagtgataaac |
515 |
Q |
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| T |
31614024 |
gatgaacatacaaattttcagttgaaaaattttcttctgaagaaaactcttcaatgaagctatcttgaggagtgataaac |
31613945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 545 - 580
Target Start/End: Complemental strand, 31613900 - 31613865
Alignment:
| Q |
545 |
ataagaaaaagaatcattcctttgagactcattgtt |
580 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31613900 |
ataagaaaaagaatcattcctttgagactcattgtt |
31613865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 35871232 - 35871176
Alignment:
| Q |
88 |
ataatactttgaaaaataaattaatcgaatataatcacatgtattactatcatgtca |
144 |
Q |
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|||||| ||||||||||||| |||| |||| ||||||||||| || |||||||||| |
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| T |
35871232 |
ataataatttgaaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtca |
35871176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 24445433 - 24445377
Alignment:
| Q |
88 |
ataatactttgaaaaataaattaatcgaatataatcacatgtattactatcatgtca |
144 |
Q |
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|||||| ||||||||||||| |||| |||| ||||||||||| || |||||||||| |
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| T |
24445433 |
ataataatttgaaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtca |
24445377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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