View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4245_high_3 (Length: 373)

Name: NF4245_high_3
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4245_high_3
NF4245_high_3
[»] chr3 (4 HSPs)
chr3 (106-366)||(10752471-10752731)
chr3 (1-75)||(10752239-10752313)
chr3 (1-76)||(7638885-7638960)
chr3 (11-76)||(21477741-21477806)
[»] chr4 (13 HSPs)
chr4 (3-76)||(55284841-55284914)
chr4 (1-76)||(13159699-13159774)
chr4 (2-37)||(14546389-14546424)
chr4 (10-76)||(44546639-44546705)
chr4 (11-76)||(39868337-39868402)
chr4 (1-37)||(1463337-1463373)
chr4 (1-69)||(7272685-7272753)
chr4 (1-76)||(21141927-21142002)
chr4 (1-76)||(37013918-37013993)
chr4 (10-76)||(24010509-24010575)
chr4 (11-76)||(17186282-17186347)
chr4 (11-76)||(46191195-46191260)
chr4 (12-76)||(30036633-30036697)
[»] chr7 (10 HSPs)
chr7 (1-76)||(42453640-42453715)
chr7 (11-76)||(22681441-22681506)
chr7 (10-76)||(7566944-7567010)
chr7 (1-76)||(41242163-41242238)
chr7 (12-76)||(3091997-3092061)
chr7 (1-37)||(13778277-13778313)
chr7 (1-73)||(14241299-14241371)
chr7 (12-76)||(21120598-21120662)
chr7 (10-38)||(22358732-22358760)
chr7 (12-76)||(32215580-32215644)
[»] chr6 (4 HSPs)
chr6 (1-76)||(14781983-14782058)
chr6 (12-76)||(16477626-16477691)
chr6 (1-38)||(31848091-31848128)
chr6 (12-76)||(18489749-18489813)
[»] chr5 (12 HSPs)
chr5 (1-76)||(26397286-26397361)
chr5 (11-76)||(40632648-40632713)
chr5 (12-76)||(1585483-1585547)
chr5 (8-76)||(37268342-37268410)
chr5 (2-37)||(21269918-21269953)
chr5 (2-37)||(21271932-21271967)
chr5 (1-38)||(7123969-7124006)
chr5 (11-76)||(15504908-15504973)
chr5 (11-76)||(17696034-17696099)
chr5 (11-76)||(17945875-17945940)
chr5 (12-76)||(21825219-21825284)
chr5 (11-76)||(23257177-23257242)
[»] chr2 (4 HSPs)
chr2 (11-76)||(3376146-3376211)
chr2 (1-76)||(1206438-1206513)
chr2 (1-76)||(45701188-45701263)
chr2 (1-38)||(42184095-42184132)
[»] chr1 (4 HSPs)
chr1 (1-76)||(10349539-10349614)
chr1 (11-76)||(20819603-20819668)
chr1 (11-76)||(24509317-24509381)
chr1 (1-37)||(34505237-34505272)
[»] chr8 (2 HSPs)
chr8 (10-76)||(17936353-17936419)
chr8 (13-76)||(29934709-29934772)
[»] scaffold0267 (1 HSPs)
scaffold0267 (12-76)||(10996-11060)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 106 - 366
Target Start/End: Original strand, 10752471 - 10752731
Alignment:
Q  106 aaaatgtatttgttttttaccaaataaagaaaatgtaattaatccc--tatccctatattatggcaaaaccattgattatgttgtgatcatgggtattgc 203  Q
    |||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10752471 aaaatgtattt--tttttaccaaataaagaaaatgtaattaatccccctatccctatattatggcaaaaccattgattatgttgtgatcatgggtattgc 10752568  T
Q  204 gcgcctattataacggcattagttaatttgctttacaccgaatgtttctctttccacattcaagaaatgataacaaagtaagcacgctttaccattctgt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10752569 gcgcctattataacggcattagttaatttgctttacaccgaatgtttctctttccacattcaagaaatgataacaaagtaagcacgctttaccattctgt 10752668  T
Q  304 ttcctctgaaatgtttagcaaaagattcagatctaaaccgaaaaggatgctagacctatgcta 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10752669 ttcctctgaaatgtttagcaaaagattcagatctaaaccgaaaaggatgctagagctatgcta 10752731  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 10752239 - 10752313
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgt 75  Q
    ||||||||||||||| |||||||| | |||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  10752239 gattcaccacttttaacacaccttgtacggggtgaatccctctacatttgagcaatatattctattttgatttgt 10752313  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7638960 - 7638885
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||| ||||||||| ||||||||||||||||||||| || | | ||| || || |||||| |||||||||||||    
T  7638960 gattcatcacttttagtacaccttatgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgtt 7638885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 21477806 - 21477741
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| ||||||||||||| ||||   ||| || || |||||| |||||||||||||    
T  21477806 ttttagcacaccttgtgcggggtgaatcactctgtctttgagtaatatattccattttgatttgtt 21477741  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 55284914 - 55284841
Alignment:
Q  3 ttcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||||||||||||||||||||||||| || |   ||| ||||| ||||| ||||||||||||||    
T  55284914 ttcaccacttttagcacaccttatgcggggtgaatcactattattttcagcaatatattttattttgatttgtt 55284841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13159774 - 13159699
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||||||||||| || ||||||||||||| || | | ||| ||||| |||||| |||||||||||||    
T  13159774 gattcaccacttttagcacactttgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 13159699  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 14546424 - 14546389
Alignment:
Q  2 attcaccacttttagcacaccttatgcggggtgaat 37  Q
    ||||||||||||||||||||||||||||||||||||    
T  14546424 attcaccacttttagcacaccttatgcggggtgaat 14546389  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 44546639 - 44546705
Alignment:
Q  10 cttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||||| ||||||||||||| || | | ||| ||||| |||||| |||||||||||||    
T  44546639 cttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 44546705  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 39868337 - 39868402
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| |||||||||| || |||| | ||| ||||| |||||| |||||||||||||    
T  39868337 ttttagcacaccttgtgcggggtgagtcactcttcttttcagcaatatattccattttgatttgtt 39868402  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1463337 - 1463373
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaat 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  1463337 gattcatcacttttagcacaccttatgcggggtgaat 1463373  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7272685 - 7272753
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttg 69  Q
    ||||||||||| |||||||||||||| ||||||||||| || |  |||| || || |||||||||||||    
T  7272685 gattcaccactgttagcacaccttatacggggtgaatcactattaatttgagtaatatattctattttg 7272753  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 21141927 - 21142002
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||||| ||  |||| ||||||||||||| |||    ||| ||||| ||||||||||||||||||||    
T  21141927 gattcaccacttttaacatgccttgtgcggggtgaatcactcctggtttgagcaatatattctattttgatttgtt 21142002  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37013993 - 37013918
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||| | ||||||||| |||||||| |||||||| |  ||||| ||| ||||| |||||| |||||||||||||    
T  37013993 gattcatcgcttttagcataccttatgtggggtgaaccattctccttttgagcaatatattccattttgatttgtt 37013918  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 24010509 - 24010575
Alignment:
Q  10 cttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||  |||| ||||||||||||| |||| ||||| | ||| |||||| |||||||||||||    
T  24010509 cttttagcatgccttgtgcggggtgaatcactcttcatttgaacaatatattcaattttgatttgtt 24010575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 17186282 - 17186347
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||| ||||| |||||| |||||| |||| | ||| ||||| |||||| |||||||||||||    
T  17186282 ttttagcataccttgtgcgggatgaatcactcttcttttgagcaatatattccattttgatttgtt 17186347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 46191260 - 46191195
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||| || ||||||||||||| || | | ||| ||||| |||||| |||||||||||||    
T  46191260 ttttagcacacattgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 46191195  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 30036633 - 30036697
Alignment:
Q  12 tttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||||||| ||||||||   ||  ||||| ||||| |||||| |||||||||||||    
T  30036633 tttagcacaccttatgcagggtgaattgttcctcatttgagcaatatattccattttgatttgtt 30036697  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42453640 - 42453715
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||| ||||||||||||||||||||||||||||||| || | | ||| ||||| |||||| ||||| |||||||    
T  42453640 gattcatcacttttagcacaccttatgcggggtgaatcactgttcgtttgagcaatatattccatttttatttgtt 42453715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 22681506 - 22681441
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| ||||||||||||| |||| | ||| ||||| |||||| |||||||||||||    
T  22681506 ttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttgtt 22681441  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 7567010 - 7566944
Alignment:
Q  10 cttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||||||||||||||||||  | | | ||| ||||| |||||| |||||||||||||    
T  7567010 cttttagcacaccttatgcggggtgaatcatttttcctttgagcaatatattccattttgatttgtt 7566944  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41242238 - 41242163
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||| || |||||||||||||| ||||||||||||| || | | ||| || || |||||| |||||||||||||    
T  41242238 gattcatcaattttagcacaccttgtgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgtt 41242163  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 3091997 - 3092061
Alignment:
Q  12 tttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||| ||||||||||| ||||||||| || | | ||| ||||| |||| |||||||||||||||    
T  3091997 tttagtacaccttatgcagggtgaatcactttgcttttgagcaatatatcctattttgatttgtt 3092061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13778313 - 13778277
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaat 37  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  13778313 gattcaccatttttagcacaccttatgcgggatgaat 13778277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14241299 - 14241371
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgattt 73  Q
    |||||| ||||||||||||| ||| ||||||||||||| || | | ||| ||||| |||||  ||||||||||    
T  14241299 gattcatcacttttagcacatcttgtgcggggtgaatcacttttcgttttagcaatatatttcattttgattt 14241371  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 21120598 - 21120662
Alignment:
Q  12 tttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||| |||||| |||||| | || | ||| ||||| |||||| |||||||||||||    
T  21120598 tttagcacaccttgtgcgggatgaatcacactgcttttgagcaatatattccattttgatttgtt 21120662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 22358760 - 22358732
Alignment:
Q  10 cttttagcacaccttatgcggggtgaatc 38  Q
    |||||||||||||||||||||||||||||    
T  22358760 cttttagcacaccttatgcggggtgaatc 22358732  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 32215644 - 32215580
Alignment:
Q  12 tttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||| ||||||||||||| ||||   ||| || || |||||| |||||||||||||    
T  32215644 tttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgtt 32215580  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14782058 - 14781983
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||||||||||||| || |||||||||| |||  | ||| ||||| |||||| |||||||||||||    
T  14782058 gattcaccacttttagcacaccttgtgtggggtgaatctctcctcttttgagcaatatattccattttgatttgtt 14781983  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 16477691 - 16477626
Alignment:
Q  12 tttagcacaccttatgcggggtgaatc-cctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||| ||||||||||||| ||| | | ||| ||||| |||||| |||||||||||||    
T  16477691 tttagcacaccttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgtt 16477626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31848128 - 31848091
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatc 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  31848128 gattcatcacttttagcacaccttgtgcggggtgaatc 31848091  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 18489749 - 18489813
Alignment:
Q  12 tttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||| ||||||||||||| |  | | ||| ||||| |||||| |||||||||||||    
T  18489749 tttagcacaccttgtgcggggtgaatcacctttcttttgagcaatatattccattttgatttgtt 18489813  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26397361 - 26397286
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||| || |||||||||||||| ||||||||||||| |||| | ||| ||||| |||||| |||||||||||||    
T  26397361 gattcatcatttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttgtt 26397286  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 40632713 - 40632648
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||||||||||||||||| |||| | ||| ||||| |||||  |||||||||||||    
T  40632713 ttttagcacaccttatgcggggtgaatcactcttcttttgagcaatatatttcattttgatttgtt 40632648  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 1585483 - 1585547
Alignment:
Q  12 tttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||| | ||||||||||| |||| | ||| ||||| |||||| |||||||||||||    
T  1585483 tttagcacaccttgtacggggtgaatcactctgcttttgagcaatatattcaattttgatttgtt 1585547  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 37268342 - 37268410
Alignment:
Q  8 cacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||||||| | ||||||||||| || | | ||| ||||| |||||| |||||||||||||    
T  37268342 cacttttagcacaccttgtacggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 37268410  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 21269953 - 21269918
Alignment:
Q  2 attcaccacttttagcacaccttatgcggggtgaat 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21269953 attcaccacttttagcacaccttgtgcggggtgaat 21269918  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 21271967 - 21271932
Alignment:
Q  2 attcaccacttttagcacaccttatgcggggtgaat 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21271967 attcaccacttttagcacaccttgtgcggggtgaat 21271932  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7124006 - 7123969
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatc 38  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  7124006 gattcatcacttttagcacaccttatgcgggttgaatc 7123969  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 15504908 - 15504973
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||| |||||||| ||||||||||||| ||||   |||||| || |||||| |||||||||||||    
T  15504908 ttttaacacaccttgtgcggggtgaatcactctatttttaagtaatatattccattttgatttgtt 15504973  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 17696099 - 17696034
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| |||||| |||||| ||||   ||| || || ||||||||||||||||||||    
T  17696099 ttttagcacaccttgtgcgggatgaatcactctgtttttgagtaatatattctattttgatttgtt 17696034  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 17945940 - 17945875
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| ||||||||||||| ||||   ||| || || |||||| |||||||||||||    
T  17945940 ttttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgtt 17945875  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 21825219 - 21825284
Alignment:
Q  12 tttagcacaccttatgcggggtgaatc-cctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||| ||||||||||||| ||| | | ||| ||||| |||||| |||||||||||||    
T  21825219 tttagcacaccttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgtt 21825284  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 23257177 - 23257242
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| ||||||||||||| || | | ||| | ||| |||||| |||||||||||||    
T  23257177 ttttagcacaccttgtgcggggtgaatcacttttcgtttgaacaatatattccattttgatttgtt 23257242  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 3376146 - 3376211
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| ||||||||||||| |||| | ||| || || ||||||||||||||||||||    
T  3376146 ttttagcacaccttgtgcggggtgaatcactcttcttttgagtaatatattctattttgatttgtt 3376211  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1206438 - 1206513
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||||||||| |||| |||||||||||||    ||||||| ||||| |||||  |||||||||||||    
T  1206438 gattcaccacttttagcacgccttgtgcggggtgaatcatcttccatttgagcaatatatttcattttgatttgtt 1206513  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 45701263 - 45701188
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||| | ||||||||||||||| ||| ||||||||| || | | ||||||||| |||||| |||||||||||||    
T  45701263 gattcatcgcttttagcacaccttgtgctgggtgaatcacttttcttttaagcaatatattccattttgatttgtt 45701188  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42184095 - 42184132
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatc 38  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  42184095 gattcaccacttttagcacatcttgtgcggggtgaatc 42184132  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10349539 - 10349614
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||| ||||||||||||||||| ||| ||||||||| || ||  ||| ||||| |||||| |||||||||||||    
T  10349539 gattcatcacttttagcacaccttgtgcagggtgaatcactttcagtttgagcaatatattccattttgatttgtt 10349614  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 20819668 - 20819603
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| ||| ||||||||| || | | ||| ||||| |||||| |||||||||||||    
T  20819668 ttttagcacaccttgtgctgggtgaatcacttttcttttgagcaatatattccattttgatttgtt 20819603  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 24509381 - 24509317
Alignment:
Q  11 ttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||||| |||||| |||||| |||| | ||| ||||| |||||| |||||||||||||    
T  24509381 ttttagcacaccttgtgcggg-tgaatcactcttcttttgagcaatatattccattttgatttgtt 24509317  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34505237 - 34505272
Alignment:
Q  1 gattcaccacttttagcacaccttatgcggggtgaat 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  34505237 gattcacca-ttttagcacaccttatgcggggtgaat 34505272  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 17936353 - 17936419
Alignment:
Q  10 cttttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    ||||||||||||||| ||||||||||||| || | | ||| ||||| |||||  |||||||||||||    
T  17936353 cttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatatttcattttgatttgtt 17936419  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 29934709 - 29934772
Alignment:
Q  13 ttagcacaccttatgcggggtgaatc-cctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||||||||||| ||||||||||||| ||||| | ||| ||||| |||||| |||||||||||||    
T  29934709 ttagcacaccttgtgcggggtgaatcacctct-cttttgagcaatatattccattttgatttgtt 29934772  T

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Target: scaffold0267 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 10996 - 11060
Alignment:
Q  12 tttagcacaccttatgcggggtgaatccctctccatttaagcaacatattctattttgatttgtt 76  Q
    |||| |||||||| ||||||||||||| |||||  ||| || || |||||| |||||||||||||    
T  10996 tttaacacaccttgtgcggggtgaatcactctctttttgagtaatatattccattttgatttgtt 11060  T

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