View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4245_high_5 (Length: 330)
Name: NF4245_high_5
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4245_high_5 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 45282503 - 45282812
Alignment:
| Q |
21 |
atggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282503 |
atggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaa |
45282602 |
T |
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| Q |
121 |
aaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataagtacataattaattaaataaaataaaaaagttttgatcgatgat |
220 |
Q |
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| T |
45282603 |
aaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataagtaaataattaattaaataaaataaaaaagttttgatcgatgat |
45282702 |
T |
|
| Q |
221 |
aattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccata |
320 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45282703 |
aattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccagtgacaatggtccttgcagggccatcaccata |
45282802 |
T |
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| Q |
321 |
cataagaatg |
330 |
Q |
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|||||||||| |
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| T |
45282803 |
cataagaatg |
45282812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 45274260 - 45274571
Alignment:
| Q |
21 |
atggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | | ||||||||||| ||||||||||||||||| |
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| T |
45274260 |
atggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaa |
45274359 |
T |
|
| Q |
121 |
aaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataa-gtacataattaattaaataaaat-aaaaaagttttgatcgatg |
218 |
Q |
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|||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||| | ||||||| ||||||||| ||||||| |||||| ||| |
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| T |
45274360 |
aaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagata |
45274459 |
T |
|
| Q |
219 |
ataattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatggtccttgcagggccatcacca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274460 |
ataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcacca |
45274559 |
T |
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| Q |
319 |
tacataagaatg |
330 |
Q |
| |
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|||||||||||| |
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| T |
45274560 |
tacataagaatg |
45274571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 90 - 330
Target Start/End: Original strand, 45293957 - 45294200
Alignment:
| Q |
90 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactctttcttcattcataag-tacataatt |
186 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |||| |||| |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45294056 |
T |
|
| Q |
187 |
aattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
286 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
45294057 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45294156 |
T |
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| Q |
287 |
cggtgacaatggtccttgcagggccatcaccatacataagaatg |
330 |
Q |
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|||| ||||||||| || | |||||||||||||||||||||||| |
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| T |
45294157 |
cggtaacaatggtctttccggggccatcaccatacataagaatg |
45294200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 90 - 330
Target Start/End: Original strand, 45302917 - 45303160
Alignment:
| Q |
90 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactctttcttcattcataag-tacataatt |
186 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |||| |||| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45303016 |
T |
|
| Q |
187 |
aattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
286 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
45303017 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45303116 |
T |
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| Q |
287 |
cggtgacaatggtccttgcagggccatcaccatacataagaatg |
330 |
Q |
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|||| ||||||||| || | |||||||||||||||||||||||| |
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| T |
45303117 |
cggtaacaatggtctttccggggccatcaccatacataagaatg |
45303160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 330
Target Start/End: Original strand, 45270796 - 45271038
Alignment:
| Q |
87 |
tatatcttttcaatgttagtta-tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataa-gtacataa |
184 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||| |||| ||| |||||| ||||||||||||| ||||| || |
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| T |
45270796 |
tatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaa |
45270895 |
T |
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| Q |
185 |
ttaattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttct |
284 |
Q |
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||||||||||||||| ||||| |||||||||| |||| |||||||||||| |||||||| || | | || ||| ||| || | ||||||| |
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| T |
45270896 |
ttaattaaataaaat--aaaagctttgatcgat-ataactgaattacgtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttctttct |
45270992 |
T |
|
| Q |
285 |
accggtgacaatggtccttgcagggccatcaccatacataagaatg |
330 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45270993 |
accagtgacaatggtctttgcagggccatcaccatacataagaatg |
45271038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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