View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4245_high_6 (Length: 257)

Name: NF4245_high_6
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4245_high_6
NF4245_high_6
[»] chr5 (4 HSPs)
chr5 (12-239)||(42628976-42629215)
chr5 (34-228)||(2756301-2756508)
chr5 (25-117)||(3761005-3761097)
chr5 (103-163)||(3678303-3678363)
[»] chr4 (4 HSPs)
chr4 (31-239)||(18847940-18848161)
chr4 (18-163)||(42110992-42111137)
chr4 (31-166)||(55329122-55329257)
chr4 (33-160)||(55353539-55353666)
[»] chr3 (1 HSPs)
chr3 (31-163)||(51361247-51361379)
[»] chr7 (4 HSPs)
chr7 (19-153)||(19883452-19883586)
chr7 (31-163)||(48888155-48888287)
chr7 (31-163)||(6232182-6232315)
chr7 (31-160)||(44346457-44346586)
[»] scaffold0691 (1 HSPs)
scaffold0691 (18-163)||(1153-1298)
[»] chr8 (2 HSPs)
chr8 (18-163)||(44684446-44684591)
chr8 (32-166)||(42202661-42202795)
[»] chr2 (2 HSPs)
chr2 (43-121)||(16080468-16080546)
chr2 (75-166)||(38971020-38971111)
[»] chr6 (1 HSPs)
chr6 (31-163)||(380661-380794)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 42628976 - 42629215
Alignment:
Q  12 acagacaccagcaacaccgaaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggc 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  42628976 acagacaccagcaacaccgaaagtcccggacgcctctaaaactaccccaactatctcagaagacattccttggggttccgacaccactcataatagaggc 42629075  T
Q  112 agggaggacttttcagtctagtaaccgtccaattccacgaaagcacctt------------aatttcaccaaattctttcacaagattactaaaaatcct 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |            |||||||||||||||||||||||||||||||||||||||    
T  42629076 agggaggacttttcagtctagtaaccgcccaattccacgaaagcaccataatttcatcaacaatttcaccaaattctttcacaagattactaaaaatcct 42629175  T
Q  200 atcatttctcactttccaaatgtccataataccacatgcc 239  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  42629176 atcatttctcactttccaaatgtccataataccgcatgcc 42629215  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 2756301 - 2756508
Alignment:
Q  34 gtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtctagt 133  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||| ||||| ||||| |||||||||  |||| ||||| ||||| || || |||||||     
T  2756301 gtcccggacgcctctaaaactaccccaactatctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtctaga 2756400  T
Q  134 aaccgtccaattccacgaaagcacctt------------aatttcaccaaattctttcacaagattactaaaaatcctatcatttctcactttccaaat- 220  Q
    |||| ||||||||||||||||||||||            |||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||     
T  2756401 aaccatccaattccacgaaagcaccttaatctcatcaacaatttcaccataatctttcacaagattattaaaaatcctatcatttctcgctttccaaatc 2756500  T
Q  221 gtccataa 228  Q
    ||||||||    
T  2756501 gtccataa 2756508  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 3761005 - 3761097
Alignment:
Q  25 acaccgaaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggag 117  Q
    ||||| ||||||||  |||||||||||||||||||| |||| |||| | ||||||||||| ||||  ||| |||||  |||||||||||||||    
T  3761005 acaccaaaagtcccaaacacctctaaaactaccccagctatatcagtaaacattccttggggttcaaacagcactcgtaatagaggcagggag 3761097  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 3678303 - 3678363
Alignment:
Q  103 aatagaggcagggaggacttttcagtctagtaaccgtccaattccacgaaagcaccttaat 163  Q
    |||||||||| |||||||| || |||||||||| |  |||||||||||||| |||||||||    
T  3678303 aatagaggcaaggaggactcttaagtctagtaatcacccaattccacgaaatcaccttaat 3678363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 18848161 - 18847940
Alignment:
Q  31 aaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtct 130  Q
    |||||||||||||||||||||||||||||||||||||||  || |||||||||| ||||| |||||||||  |||||||||||||||||||||| |||||    
T  18848161 aaagtcccggacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaagtct 18848062  T
Q  131 agtaaccgtccaattccacgaaagcaccttaatttcacca--aat----------tctttcacaagattactaaaaatcctatcatttctcactttccaa 218  Q
    |||||||| |||||||||| ||||||||||||| ||| ||  |||          ||||||||||||||| |||||||||||||||||||  ||||||||    
T  18848061 agtaaccgcccaattccaccaaagcaccttaatgtcatcaacaatttcatcacgatctttcacaagattattaaaaatcctatcatttcttgctttccaa 18847962  T
Q  219 at-gtccataataccacatgcc 239  Q
    || |||||||||||| ||||||    
T  18847961 atcgtccataataccgcatgcc 18847940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 42110992 - 42111137
Alignment:
Q  18 accagcaacaccgaaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggag 117  Q
    |||||| ||||| |||||||||||||||||||||||||||||| || ||  || |  |||||||||| ||||| ||||||||||||| |||||||| |||    
T  42110992 accagcgacaccaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcaaaaaagaggcagtgag 42111091  T
Q  118 gacttttcagtctagtaaccgtccaattccacgaaagcaccttaat 163  Q
    |||| || ||||| |||| || ||||||||| || |||||||||||    
T  42111092 gactcttaagtcttgtaatcgcccaattccaagagagcaccttaat 42111137  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 55329257 - 55329122
Alignment:
Q  31 aaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtct 130  Q
    |||||| ||||||||||||||||| ||||| ||||||||  |  |||||||||  ||||| |||||||||  |||||||||| |||| ||| || |||||    
T  55329257 aaagtcacggacacctctaaaactgccccacctatctcaataagcattccttgaggttccaacaccactcgtaatagaggcaaggagaactcttaagtct 55329158  T
Q  131 agtaaccgtccaattccacgaaagcaccttaatttc 166  Q
     | |  ||| ||||| ||||||| ||||||||||||    
T  55329157 tgaattcgttcaatttcacgaaatcaccttaatttc 55329122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 55353666 - 55353539
Alignment:
Q  33 agtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtctag 132  Q
    |||||| | ||||||| ||||||||||| ||||| || ||| |||| ||||| |||||  ||||| ||  || ||||||| ||||||||||| ||||| |    
T  55353666 agtccctgccacctctgaaactaccccacctatcgcaaaaggcatttcttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaagtctgg 55353567  T
Q  133 taaccgtccaattccacgaaagcacctt 160  Q
     |  || |||||||||||| | ||||||    
T  55353566 aattcgcccaattccacgagatcacctt 55353539  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 51361379 - 51361247
Alignment:
Q  31 aaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtct 130  Q
    |||||||| ||||||||||||||||||||||||||||||  || |||||||||| ||||| |||||||||| ||||||||||||||| |||||| |||||    
T  51361379 aaagtccctgacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcataatagaggcagggagaacttttgagtct 51361280  T
Q  131 agtaaccgtccaattccacgaaagcaccttaat 163  Q
    ||||||||||||||||||| |||||||||||||    
T  51361279 agtaaccgtccaattccacaaaagcaccttaat 51361247  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 19883452 - 19883586
Alignment:
Q  19 ccagcaacaccgaaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggagg 118  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||  | ||||||||||| ||||| |||||||||  |||||||||| |||||    
T  19883452 ccagcaacaccaagagtcccggacacctctaaaactaccccaactatctcaataaacattccttggggttccaacaccactcgtaatagaggcacggagg 19883551  T
Q  119 acttttcagtctagtaaccgtccaattccacgaaa 153  Q
    ||| || |||||||  |||| ||||||||||||||    
T  19883552 actctttagtctagacaccgcccaattccacgaaa 19883586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 48888287 - 48888155
Alignment:
Q  31 aaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtct 130  Q
    ||||||||||||||||||| |||||||||| | |||||| |||||||||||||| ||||| |||||||||  |||||||||| |||||||| || |||||    
T  48888287 aaagtcccggacacctctagaactaccccaccaatctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttagtct 48888188  T
Q  131 agtaaccgtccaattccacgaaagcaccttaat 163  Q
    || |  |  |||||||||||| |||||||||||    
T  48888187 agaattcacccaattccacgagagcaccttaat 48888155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 6232315 - 6232182
Alignment:
Q  31 aaagtcccggacacctctaaaactacccca-actatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtc 129  Q
    |||||||||||||||||||||||| ||||| | |||||||  |  |||||||||| |||||  ||||||||  |||||||||| ||||||||  | ||||    
T  6232315 aaagtcccggacacctctaaaactgccccacattatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtc 6232216  T
Q  130 tagtaaccgtccaattccacgaaagcaccttaat 163  Q
    ||| |   | |||||||||||||| |||||||||    
T  6232215 tagaattagcccaattccacgaaatcaccttaat 6232182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 44346586 - 44346457
Alignment:
Q  31 aaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtct 130  Q
    ||||||||  |||||||| ||||| ||||| ||| | || ||| ||||| |||| |||||  |||||||   || ||||||| ||||||||||| |||||    
T  44346586 aaagtccctaacacctctgaaacttccccacctaacgcaaaaggcattctttggggttccagcaccacttgtaaaagaggcaaggaggacttttaagtct 44346487  T
Q  131 agtaaccgtccaattccacgaaagcacctt 160  Q
    || |  || |||||| ||||||||||||||    
T  44346486 agaattcgcccaattacacgaaagcacctt 44346457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 1298 - 1153
Alignment:
Q  18 accagcaacaccgaaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggag 117  Q
    |||||| ||||| |||||||||||||||||||||||||||||| || ||  || |  ||||||||||  |||| |||||||||| || ||||||||||||    
T  1298 accagcgacaccaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttgggcttccaacaccactcataaaagaggcagggag 1199  T
Q  118 gacttttcagtctagtaaccgtccaattccacgaaagcaccttaat 163  Q
    |||| || ||||| |||| || ||||||||| |  |||||||||||    
T  1198 gactcttaagtcttgtaatcgcccaattccaagggagcaccttaat 1153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 44684591 - 44684446
Alignment:
Q  18 accagcaacaccgaaagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggag 117  Q
    |||||| ||||| |||||||| ||||||||||||||||||||| || ||  || |  |||||||||| ||||| |||||||||| || ||||||||||||    
T  44684591 accagcgacaccaaaagtcccagacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcataaaagaggcagggag 44684492  T
Q  118 gacttttcagtctagtaaccgtccaattccacgaaagcaccttaat 163  Q
    |||| || ||| | |||| || ||||||||| || |||||||||||    
T  44684491 gactcttaagttttgtaatcgcccaattccaagagagcaccttaat 44684446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 42202795 - 42202661
Alignment:
Q  32 aagtcccggacacctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtcta 131  Q
    ||||||| ||||||||||||||| ||||| ||||||||  |  |||||  | | ||||| |||||||||  |||||||||| |||||||| || ||||||    
T  42202795 aagtcccagacacctctaaaactgccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 42202696  T
Q  132 gtaaccgtccaattccacgaaagcaccttaatttc 166  Q
    | |  |  |||||||||| ||| ||||||||||||    
T  42202695 gaattcacccaattccacaaaatcaccttaatttc 42202661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 16080546 - 16080468
Alignment:
Q  43 acctctaaaactaccccaactatctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggact 121  Q
    ||||||||||||||||||| | |||||  | ||||||||||| ||||| |||||||||| || ||||||| ||||||||    
T  16080546 acctctaaaactaccccaattttctcatcaaacattccttggggttccaacaccactcataaaagaggcaaggaggact 16080468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 38971111 - 38971020
Alignment:
Q  75 cattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtctagtaaccgtccaattccacgaaagcaccttaatttc 166  Q
    ||||| |||| ||||| |||||||||  ||||||||||  |||||||||| ||||||| |   | |||||||||||||| ||||||||||||    
T  38971111 cattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaatcaccttaatttc 38971020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 380661 - 380794
Alignment:
Q  31 aaagtcccggacacctctaaaactaccccaact-atctcagaagacattccttggagttccgacaccactcaaaatagaggcagggaggacttttcagtc 129  Q
    |||||||||||||||||||||||| |||||  | ||||||  |  |||||||||| |||||  ||||||||  |||||||||| ||||||||  | ||||    
T  380661 aaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtc 380760  T
Q  130 tagtaaccgtccaattccacgaaagcaccttaat 163  Q
    ||| |   | |||||||||||||| |||||||||    
T  380761 tagaattagcccaattccacgaaatcaccttaat 380794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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