View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4245_low_10 (Length: 236)
Name: NF4245_low_10
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4245_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 34646615 - 34646409
Alignment:
| Q |
14 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34646615 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggaaggtataa |
34646516 |
T |
|
| Q |
114 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646515 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgc |
34646416 |
T |
|
| Q |
214 |
ttgtaat |
220 |
Q |
| |
|
||||||| |
|
|
| T |
34646415 |
ttgtaat |
34646409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 34666309 - 34666103
Alignment:
| Q |
14 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34666309 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggaaggtataa |
34666210 |
T |
|
| Q |
114 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34666209 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgc |
34666110 |
T |
|
| Q |
214 |
ttgtaat |
220 |
Q |
| |
|
||||||| |
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|
| T |
34666109 |
ttgtaat |
34666103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 19648952 - 19649072
Alignment:
| Q |
30 |
gttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataagtgtcaatgttgtacc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | || || |||||||| |||||||| || | || |||| ||| |||||||||||||| |
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| T |
19648952 |
gttgattaggatcatcaacacgatctagtttcaccagttgtgctaccgccgattccaaattagtataaacatgagacggtaaaagagtcaatgttgtacc |
19649051 |
T |
|
| Q |
130 |
tgaatcaattatgatgttacc |
150 |
Q |
| |
|
||||||| |||||||||||| |
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|
| T |
19649052 |
agaatcaagtatgatgttacc |
19649072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 19649096 - 19649131
Alignment:
| Q |
180 |
caaattctactcttttgtttccaacactaaatgctt |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
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|
| T |
19649096 |
caaattctattcttttgtttccaacactaaatgctt |
19649131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 45645811 - 45645608
Alignment:
| Q |
14 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataa |
113 |
Q |
| |
|
|||||||||| |||| ||| || ||||||||| ||||| | ||||||||||||||| ||||||||||||||||| || |||| ||||| | ||||| || |
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|
| T |
45645811 |
tagcataggccgaatagtttataaggatcatccacacgttttagtttcaccaaatcaaccacagctgattccaaatttttataaacgtcagctggtaaaa |
45645712 |
T |
|
| Q |
114 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgc |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||| | || ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
45645711 |
ccatcaatgttgtacctgaatcaattataatgttaccttc---atcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgc |
45645615 |
T |
|
| Q |
214 |
ttgtaat |
220 |
Q |
| |
|
|| |||| |
|
|
| T |
45645614 |
ttctaat |
45645608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 1390533 - 1390499
Alignment:
| Q |
181 |
aaattctactcttttgtttccaacactaaatgctt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
1390533 |
aaattctactcttttgtttccaacactaaatgctt |
1390499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 34303279 - 34303084
Alignment:
| Q |
17 |
cataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataagtg |
116 |
Q |
| |
|
||||| || ||||||||||||||||||||||| || |||||| |||||||||| || | ||||| | ||| |||||||| || || ||||||| || || |
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|
| T |
34303279 |
catagactaaattgttgattaggatcatcaactcgttctagtgtcaccaaatctacgattgctgaattcaatttagtataaacatcagatggtacaaatg |
34303180 |
T |
|
| Q |
117 |
tcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgctt |
215 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||| ||| |||| || || || ||| |||||||||||||||||| |||||| |||||||||| |
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|
| T |
34303179 |
tcacaattgtacttgaatcaattatgatgttaccttcttcaacacc---ttttgaggaccctgcaaattctactcttttgtctccaacgctaaatgctt |
34303084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 14183535 - 14183361
Alignment:
| Q |
38 |
ggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataagtgtcaatgttgtacctgaatcaa |
137 |
Q |
| |
|
||||||| |||||| | ||||||||||| |||| ||| ||||||||||| ||| |||| || || | ||| |||| ||||| |||||||||||||||| |
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|
| T |
14183535 |
ggatcattaacacgcttcagtttcaccaattccaacaccgctgattccaaattattataaacatcagttggaataaccgtcaacgttgtacctgaatcaa |
14183436 |
T |
|
| Q |
138 |
ttatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgctt |
215 |
Q |
| |
|
|||||||||||||||||| | ||||| | ||||| ||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
14183435 |
ttatgatgttaccttcatgaccaccattt---gaagacccttcaaattctattcttttgttaccaacactaaatgctt |
14183361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 40718304 - 40718118
Alignment:
| Q |
26 |
aattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataagtgtcaatgttg |
125 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||| | || |||| ||||||||||| ||| |||| | | ||||| | || ||||| |||| |
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|
| T |
40718304 |
aattgttgagttggatcatcaacacgctctagtttcacagattctgccacggctgattccaaattattataaatattagatggcaaaatcgtcaacgttg |
40718205 |
T |
|
| Q |
126 |
tacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgctt |
215 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||| | ||||| | |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40718204 |
tacctgaatcaattatgatgttac---cctcatcactaccatttgaagatctgccaaattctattcttttgtttccaacactaaatgctt |
40718118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 14192404 - 14192311
Alignment:
| Q |
119 |
aatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgctt |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||| || ||| ||||||| |||||||||| | ||||||||||||||||||| |
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|
| T |
14192404 |
aatgttgtacccgaatcaattatgatgttaccctcattatcacca--tttggaa-ctcctccaatttctactcttctatttccaacactaaatgctt |
14192311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 14192492 - 14192436
Alignment:
| Q |
31 |
ttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaa |
87 |
Q |
| |
|
|||| ||||||| |||||||| |||| ||||||||||| |||||||| |||||||| |
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|
| T |
14192492 |
ttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagcagattccaa |
14192436 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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