View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4245_low_11 (Length: 236)
Name: NF4245_low_11
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4245_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1561308 - 1561090
Alignment:
| Q |
1 |
atctctaacttttcatttatttcttctcttggctctccaactaagaacaatgcaattttcatattattggcaccaccccttggacatattcaacaagtac |
100 |
Q |
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| T |
1561308 |
atctctaacttttcatttatttcttctcttggctctccaactaagaacaatgcaattttcat--tattggcaccaccccttggacatattcaacaagtac |
1561211 |
T |
|
| Q |
101 |
gtctacatccaagatataaagataaaggctaaaagctcgacccttaatgtatatcggaaaatcttcaatatttctagctagtattctcaaactaatatat |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1561210 |
gtctacaaccaagatataaagataaaggctaaaagctcgacccttaatgtatatcggaaaatcttcaatatttccagctagtattctcaaactaatatat |
1561111 |
T |
|
| Q |
201 |
cagatattcgcaccacatata |
221 |
Q |
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||||||||||||||||||||| |
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| T |
1561110 |
cagatattcgcaccacatata |
1561090 |
T |
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