View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4245_low_12 (Length: 225)
Name: NF4245_low_12
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4245_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 38421175 - 38420971
Alignment:
| Q |
1 |
catgtgaagcaagttattcttaatccaaatacaagtacaatctttgtgacaagcatcacatgcacattaattggaagtgaatccacagtagcttaatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
38421175 |
catgtgaagcaagttattcttaatccaaatacaagtacaatctttgtgacaagcatcacatgcacatt----gggagtgaatccacagtagcttaatcat |
38421080 |
T |
|
| Q |
101 |
ccaagcctnnnnnnnatacccacttattaaattaattattagtacatacataccactatataaattaatcaaatgcatactaaaatttgcattccattgc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38421079 |
ccaagcctcccccc-atacccacttattaaattaattattagtacatacataccactatataaattaatcaaatgcatactaaaatttgcattccattgc |
38420981 |
T |
|
| Q |
201 |
attgcattga |
210 |
Q |
| |
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|||||||||| |
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| T |
38420980 |
attgcattga |
38420971 |
T |
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