View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4245_low_2 (Length: 477)

Name: NF4245_low_2
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4245_low_2
NF4245_low_2
[»] chr3 (12 HSPs)
chr3 (5-174)||(43616161-43616330)
chr3 (243-369)||(29438248-29438374)
chr3 (243-376)||(43615679-43615812)
chr3 (370-437)||(43615009-43615076)
chr3 (102-172)||(42914485-42914555)
chr3 (5-91)||(43603290-43603376)
chr3 (15-91)||(43609698-43609775)
chr3 (368-427)||(42914669-42914728)
chr3 (176-214)||(29438417-29438455)
chr3 (174-214)||(43615840-43615880)
chr3 (103-174)||(29313137-29313208)
chr3 (301-363)||(11985585-11985647)
[»] chr7 (10 HSPs)
chr7 (252-364)||(19362399-19362511)
chr7 (243-363)||(44598444-44598563)
chr7 (248-364)||(47967521-47967636)
chr7 (289-364)||(9698331-9698406)
chr7 (291-363)||(19113527-19113598)
chr7 (173-214)||(31642754-31642795)
chr7 (174-214)||(44598579-44598619)
chr7 (379-425)||(23705216-23705262)
chr7 (174-211)||(9698211-9698248)
chr7 (131-174)||(23705386-23705429)
[»] chr1 (8 HSPs)
chr1 (256-364)||(52453923-52454031)
chr1 (249-364)||(170872-170987)
chr1 (253-364)||(4808345-4808456)
chr1 (289-364)||(28702407-28702478)
chr1 (174-211)||(171039-171076)
chr1 (174-214)||(52453836-52453876)
chr1 (103-174)||(46906000-46906071)
chr1 (126-159)||(26673786-26673819)
[»] chr6 (3 HSPs)
chr6 (266-364)||(14533478-14533576)
chr6 (174-214)||(14533644-14533684)
chr6 (289-349)||(20613247-20613307)
[»] chr8 (7 HSPs)
chr8 (291-363)||(27084472-27084544)
chr8 (102-174)||(33285070-33285142)
chr8 (374-426)||(3499376-3499428)
chr8 (174-214)||(25430942-25430982)
chr8 (377-426)||(4490536-4490585)
chr8 (370-423)||(33285257-33285310)
chr8 (378-426)||(19722754-19722802)
[»] chr2 (8 HSPs)
chr2 (257-364)||(17623420-17623527)
chr2 (375-436)||(32532584-32532645)
chr2 (103-174)||(32532765-32532836)
chr2 (371-425)||(12287802-12287856)
chr2 (249-341)||(14735690-14735782)
chr2 (282-349)||(5887872-5887939)
chr2 (282-344)||(17303255-17303317)
chr2 (126-174)||(12287972-12288020)
[»] chr4 (6 HSPs)
chr4 (289-364)||(13564708-13564783)
chr4 (174-211)||(13564588-13564625)
chr4 (239-344)||(26494421-26494525)
chr4 (254-342)||(31523046-31523134)
chr4 (250-316)||(46852108-46852174)
chr4 (296-349)||(29096115-29096168)
[»] chr5 (8 HSPs)
chr5 (103-174)||(4870217-4870288)
chr5 (103-174)||(3631947-3632018)
chr5 (254-349)||(15974121-15974216)
chr5 (132-174)||(13106135-13106177)
chr5 (374-427)||(10721274-10721327)
chr5 (289-349)||(18768380-18768440)
chr5 (103-174)||(2977233-2977304)
chr5 (132-174)||(13036145-13036187)
[»] scaffold0060 (1 HSPs)
scaffold0060 (289-363)||(35661-35735)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 43616330 - 43616161
Alignment:
Q  5 cagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggatcattgacccgatt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43616330 cagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggatcatagacccgatt 43616231  T
Q  105 aattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616230 aattcaaggtcctctcaattcttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 43616161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 243 - 369
Target Start/End: Complemental strand, 29438374 - 29438248
Alignment:
Q  243 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 342  Q
    |||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438374 ttcatggtaccccctttccactgcaccagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 29438275  T
Q  343 ctacccccaaagagatccgcccttgcc 369  Q
    || ||||||||||||||||||| ||||    
T  29438274 ctgcccccaaagagatccgcccctgcc 29438248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 243 - 376
Target Start/End: Complemental strand, 43615812 - 43615679
Alignment:
Q  243 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 342  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  43615812 ttcatggtaccccctttccactgcagcaactcaattcagattgatgttatactcctaatatagtatataaggaaactttaggggataacatgacacctgc 43615713  T
Q  343 ctacccccaaagagatccgcccttgccctcccgg 376  Q
    || |||||||| ||| ||| || |||||||||||    
T  43615712 ctgcccccaaaaagacccgtccatgccctcccgg 43615679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 43615076 - 43615009
Alignment:
Q  370 ctcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatctaa 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615076 ctcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatctaa 43615009  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 42914485 - 42914555
Alignment:
Q  102 attaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctcctta 172  Q
    ||||||||||| |||||  |||  ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  42914485 attaattcaagctcctcctaatgcttgacatgtttatgcaactatcattagaaatatcaatgatctcctta 42914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 43603376 - 43603290
Alignment:
Q  5 cagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggat 91  Q
    |||||||||||  |||||| |||||| |||| |||||||||| |||||||| || ||||||||||||||||| |||| ||| |||||    
T  43603376 cagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaagaaggat 43603290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 43609775 - 43609698
Alignment:
Q  15 catagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaa-caacaaagtaggat 91  Q
    ||||||||| || |||| |||||||| ||||| |||||||| ||||||||||| ||||||||| |||| |||||||||    
T  43609775 catagcagaagtataagaaagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggat 43609698  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 42914669 - 42914728
Alignment:
Q  368 ccctcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggc 427  Q
    ||||||||  |||||||| ||| |||||||||||| | ||||||||||||||||||||||    
T  42914669 ccctcccgaacttggaagctttacttctcgctgatacatctagagtgcagttcttaaggc 42914728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 29438455 - 29438417
Alignment:
Q  176 ttttaaatacgatatgcaataatagaagattaaacaagt 214  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  29438455 ttttaaatacaatatgcaataatagaagattaaacaagt 29438417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 43615880 - 43615840
Alignment:
Q  174 ttttttaaatacgatatgcaataatagaagattaaacaagt 214  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  43615880 ttttttaaatacgatattgaataatagaagattaaacaagt 43615840  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 29313137 - 29313208
Alignment:
Q  103 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    |||||||||| ||| || |||  ||| ||||||||||| |||||||| |||||||| || ||||||||||||    
T  29313137 ttaattcaagctccccttaatgcttgacatgtttatgccactatcatcagaaatattaaggatctccttaat 29313208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 11985585 - 11985647
Alignment:
Q  301 tatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 363  Q
    |||||||||||||  ||  |||||||||||| |||| |||||| ||| |||||||||||||||    
T  11985585 tatagtatataagttaatcttgggggataccgtggctcctgccgaccaccaaagagatccgcc 11985647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 252 - 364
Target Start/End: Complemental strand, 19362511 - 19362399
Alignment:
Q  252 ccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccccca 351  Q
    ||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19362511 ccccctttccactgcagcagctcaattcagattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctgccccca 19362412  T
Q  352 aagagatccgccc 364  Q
    |||||||||||||    
T  19362411 aagagatccgccc 19362399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 243 - 363
Target Start/End: Complemental strand, 44598563 - 44598444
Alignment:
Q  243 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 342  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44598563 ttcacggtaccccctttccactgcagcagctcaattcaaattaatattatactcctaatatagtatataaggaaactttgggggataccatgacacctgc 44598464  T
Q  343 ctacccccaaagagatccgcc 363  Q
    ||| |||||||||||| ||||    
T  44598463 cta-ccccaaagagatacgcc 44598444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 248 - 364
Target Start/End: Original strand, 47967521 - 47967636
Alignment:
Q  248 ggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacc 347  Q
    |||||||||||||||||  |||| ||||||| | ||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||| || || ||    
T  47967521 ggtaccccctttccactggagcagctcaatttagatttatgttatactcctaatataatatataaggaaattttgagggataccatggcacttg-ctgcc 47967619  T
Q  348 cccaaagagatccgccc 364  Q
    |||||| ||||||||||    
T  47967620 cccaaatagatccgccc 47967636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 9698331 - 9698406
Alignment:
Q  289 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 364  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  9698331 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 9698406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 19113527 - 19113598
Alignment:
Q  291 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 363  Q
    |||| ||||||| |||||||||||||| ||||||| || ||||| |||| |||||||||||||||||||||||    
T  19113527 atacacctaatacagtatataaggaaaatttgggg-atgccatgacaccagcctacccccaaagagatccgcc 19113598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 31642795 - 31642754
Alignment:
Q  173 attttttaaatacgatatgcaataatagaagattaaacaagt 214  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  31642795 attttttaaatacaatatgcaataatagaagattaaacaagt 31642754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 44598619 - 44598579
Alignment:
Q  174 ttttttaaatacgatatgcaataatagaagattaaacaagt 214  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  44598619 ttttttaaatacaatatgcaataatagaagattaaacaagt 44598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 23705262 - 23705216
Alignment:
Q  379 ttggaagattttcttctcgctgatgcgtctagagtgcagttcttaag 425  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  23705262 ttggaagatttacttcttgctgatgcgtctagagtgtagttcttaag 23705216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 9698211 - 9698248
Alignment:
Q  174 ttttttaaatacgatatgcaataatagaagattaaaca 211  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9698211 ttttttaaatacaatatgcaataatagaagattaaaca 9698248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 23705429 - 23705386
Alignment:
Q  131 atgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    |||||||||||||||||| |||||||||||| |||||| |||||    
T  23705429 atgtttatgcaactatcaatagaaatatcaatgatctctttaat 23705386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 256 - 364
Target Start/End: Original strand, 52453923 - 52454031
Alignment:
Q  256 ctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaaga 355  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  52453923 ctttccactgcagcagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatgacacttgcctgcccccaaaga 52454022  T
Q  356 gatccgccc 364  Q
    |||||||||    
T  52454023 gatccgccc 52454031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 364
Target Start/End: Complemental strand, 170987 - 170872
Alignment:
Q  249 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccc 348  Q
    ||||||||| |||||| || ||||||||||| | ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||    
T  170987 gtaccccctctccactgcaacaactcaattctagttgttattatactcctaatatactatataaggaaactttgggggatatcatggcacctgccttccc 170888  T
Q  349 ccaaagagatccgccc 364  Q
    |||||||||| |||||    
T  170887 ccaaagagattcgccc 170872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 253 - 364
Target Start/End: Complemental strand, 4808456 - 4808345
Alignment:
Q  253 cccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaa 352  Q
    ||||||||||||||||||| ||||||| | ||| |  |||||| ||||||| ||||||||||||||||||| |||||||| | ||||||||| ||| |||    
T  4808456 cccctttccactacagcaaatcaattctagttgttaatatacttctaatatggtatataaggaaactttggaggataccacgacacctgcctgccctcaa 4808357  T
Q  353 agagatccgccc 364  Q
    |||||| |||||    
T  4808356 agagattcgccc 4808345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 28702407 - 28702478
Alignment:
Q  289 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 364  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||    |||||||||||||||||||    
T  28702407 ttatactcttaatatagtatataaggaaactttgagggataccatgtcacctg----cccccaaagagatccgccc 28702478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 171076 - 171039
Alignment:
Q  174 ttttttaaatacgatatgcaataatagaagattaaaca 211  Q
    |||||||||||| |||||||||||||||||||||||||    
T  171076 ttttttaaatacaatatgcaataatagaagattaaaca 171039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 52453836 - 52453876
Alignment:
Q  174 ttttttaaatacgatatgcaataatagaagattaaacaagt 214  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  52453836 ttttttaaatacaatatgctataatagaagattaaacaagt 52453876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 46906000 - 46906071
Alignment:
Q  103 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    ||||||||||  || ||||||| ||||||||||||||| |||| ||| |||||| | || ||||||||||||    
T  46906000 ttaattcaagcccccctcaattcttggcatgtttatgccactaccatcagaaatgttaaggatctccttaat 46906071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 26673786 - 26673819
Alignment:
Q  126 ttggcatgtttatgcaactatcattagaaatatc 159  Q
    |||||||||||||||||||| |||||||||||||    
T  26673786 ttggcatgtttatgcaactaacattagaaatatc 26673819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 14533576 - 14533478
Alignment:
Q  266 cagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 364  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14533576 cagcagctcaatttatattgatgttatactcctaatatagtatatcaggaaactttgggggataccatggcacctgcctgcccccaaagagatccgccc 14533478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 14533684 - 14533644
Alignment:
Q  174 ttttttaaatacgatatgcaataatagaagattaaacaagt 214  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  14533684 ttttttaaatacaatatgcaacaatagaagattaaacaagt 14533644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 20613247 - 20613307
Alignment:
Q  289 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 349  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  20613247 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacctacctgcccc 20613307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 27084472 - 27084544
Alignment:
Q  291 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 363  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  27084472 atacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagatccgcc 27084544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 33285070 - 33285142
Alignment:
Q  102 attaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    ||||||| ||| ||||| ||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  33285070 attaatttaagctcctcccaatgcttgacatgtttatgcaactatcattagaaatatcaacgatctgcttaat 33285142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 3499376 - 3499428
Alignment:
Q  374 cgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg 426  Q
    ||||||||||||| || ||||||||||||| || |||||||||||||||||||    
T  3499376 cgggcttggaagagttacttctcgctgatgtgtttagagtgcagttcttaagg 3499428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 25430982 - 25430942
Alignment:
Q  174 ttttttaaatacgatatgcaataatagaagattaaacaagt 214  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  25430982 tttttttaatacaatatgcaataatagaagattaaacaagt 25430942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 4490585 - 4490536
Alignment:
Q  377 gcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg 426  Q
    ||||||||||||| ||| | | |||||| |||||||||||||||||||||    
T  4490585 gcttggaagatttacttattgttgatgcttctagagtgcagttcttaagg 4490536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 33285257 - 33285310
Alignment:
Q  370 ctcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttctta 423  Q
    |||||||||||||||| ||| |||||| || |||| ||||||||| ||||||||    
T  33285257 ctcccgggcttggaagctttacttctcactaatgcatctagagtgtagttctta 33285310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 19722754 - 19722802
Alignment:
Q  378 cttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg 426  Q
    |||||||||||| || || | |||||| |||||||||||||||||||||    
T  19722754 cttggaagatttactccttgatgatgcttctagagtgcagttcttaagg 19722802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 17623420 - 17623527
Alignment:
Q  257 tttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagag 356  Q
    |||||||| ||||| ||||||||   ||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||    
T  17623420 tttccactgcagcagctcaattctggttgttattatacttctaatatagtatataaggaaactttgggggataccatgacacatgtctgcccccaaagag 17623519  T
Q  357 atccgccc 364  Q
    ||||||||    
T  17623520 atccgccc 17623527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 32532645 - 32532584
Alignment:
Q  375 gggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatcta 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32532645 gggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtagtcta 32532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 32532836 - 32532765
Alignment:
Q  103 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32532836 ttaattcaagctcctctcaactcttggcatgtttatgcaactatcattagaaatatcaatgatctccttaat 32532765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 12287856 - 12287802
Alignment:
Q  371 tcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaag 425  Q
    |||| |||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  12287856 tcccaggcttggaagatttactcctcgctgatgcttctagagtgcagttcttaag 12287802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 14735690 - 14735782
Alignment:
Q  249 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctg 341  Q
    ||||||| ||||||| ||| ||||  ||||| ||||||| | |||| |||||||||||||||||| ||| | ||||| || ||||||| ||||    
T  14735690 gtaccccatttccacaacaacaaccaaattctaattgatataatacacctaatatagtatataagaaaaatctggggaatgccatggcccctg 14735782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 5887939 - 5887872
Alignment:
Q  282 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 349  Q
    |||||| |||||| |||||| |||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  5887939 attgatattatacacctaatgtagtatataagggaaatctgggggatgccatggcacctacctgcccc 5887872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 17303255 - 17303317
Alignment:
Q  282 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcct 344  Q
    |||||| |||||| ||||||||||||||||||| || | |||||||| ||||  |||||||||    
T  17303255 attgatattatacacctaatatagtatataagggaaatctgggggatgccataacacctgcct 17303317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 12288020 - 12287972
Alignment:
Q  126 ttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    ||||||||||||||| ||||||||||||||| |  | ||||||||||||    
T  12288020 ttggcatgtttatgccactatcattagaaatgttgaagatctccttaat 12287972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 13564708 - 13564783
Alignment:
Q  289 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 364  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  13564708 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 13564783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 13564588 - 13564625
Alignment:
Q  174 ttttttaaatacgatatgcaataatagaagattaaaca 211  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13564588 ttttttaaatacaatatgcaataatagaagattaaaca 13564625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 344
Target Start/End: Complemental strand, 26494525 - 26494421
Alignment:
Q  239 ccagttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcac 338  Q
    ||||||||||| ||||| || ||||| || ||||| ||||   |||||  |||||| ||||||||||||||||||| || | ||||||||  ||||||||    
T  26494525 ccagttcatggcacccc-ttaccactgcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcac 26494427  T
Q  339 ctgcct 344  Q
    ||||||    
T  26494426 ctgcct 26494421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 31523134 - 31523046
Alignment:
Q  254 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 342  Q
    ||||| ||||| ||| | || ||||| | ||| ||| |||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  31523134 cccttaccactgcagtagctgaattctagttgttgtaatacacctaatacaatatataaggaaactttgggggatgccatgacacctgc 31523046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 46852108 - 46852174
Alignment:
Q  250 taccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaa 316  Q
    |||| |||||||||| |||||||| ||||| ||||| | | |||| ||||||||| |||||||||||    
T  46852108 taccgcctttccactgcagcaactgaattctaattgttataatacacctaatataatatataaggaa 46852174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 29096168 - 29096115
Alignment:
Q  296 cctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 349  Q
    |||||||||||| |||||| || | |||||||| ||||||||||||||| ||||    
T  29096168 cctaatatagtaaataagggaaatctgggggatgccatggcacctgcctgcccc 29096115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 4870288 - 4870217
Alignment:
Q  103 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    |||||||||| ||||||||||  ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  4870288 ttaattcaagctcctctcaatgcttgacatgtttatgcaactatcattagaaatatcaacaatctccttaat 4870217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 3632018 - 3631947
Alignment:
Q  103 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    ||||||||||  |||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  3632018 ttaattcaagcccctctcaatgtttgacatgtttatgcaactatcattagaaacatcaacgatctccttaat 3631947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 15974121 - 15974216
Alignment:
Q  254 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 349  Q
    ||||| |||||||| ||||| ||||   |||||  | |||| |||||||||||||||||||||| | | |||||| ||||||||||||||| ||||    
T  15974121 cccttaccactacaacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgcccc 15974216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 13106177 - 13106135
Alignment:
Q  132 tgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  13106177 tgtttatgcaattatcattagaaatattaacgatctccttaat 13106135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 10721327 - 10721274
Alignment:
Q  374 cgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggc 427  Q
    |||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||    
T  10721327 cgggtttggaagatttacttcttgctgatgcttctagagtacagttcttaaggc 10721274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 18768380 - 18768440
Alignment:
Q  289 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 349  Q
    |||||| ||||||||||||||||||| ||   |||||||| ||||||||||||||| ||||    
T  18768380 ttatacacctaatatagtatataagggaaacctgggggatgccatggcacctgcctgcccc 18768440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 2977233 - 2977304
Alignment:
Q  103 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    |||||||||| ||||||||||  ||||||| ||||||| |||||| | | |||| |||| ||||||||||||    
T  2977233 ttaattcaagttcctctcaatgcttggcatttttatgccactatcgtaaaaaatgtcaaggatctccttaat 2977304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 13036187 - 13036145
Alignment:
Q  132 tgtttatgcaactatcattagaaatatcaacgatctccttaat 174  Q
    ||||||| |||||||||||| |||||| |||||||||||||||    
T  13036187 tgtttatacaactatcattaaaaatattaacgatctccttaat 13036145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 363
Target Start/End: Complemental strand, 35735 - 35661
Alignment:
Q  289 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 363  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||| || || ||||  || |||||||||    
T  35735 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacttggctgccccttaaaagatccgcc 35661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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