View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4245_low_3 (Length: 400)
Name: NF4245_low_3
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4245_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 45274084 - 45273719
Alignment:
| Q |
13 |
tactaccgcaattgtcttgtctctgtta-ccgttgacttcatctttggatcatctgctaccttgatccaacactctacgatcattgtaagaaagcctggc |
111 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45274084 |
tactaccgcaattgtcttgtctctggtaaccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaagcctggc |
45273985 |
T |
|
| Q |
112 |
aaagggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273984 |
aaagggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcat |
45273885 |
T |
|
| Q |
212 |
tgttcccagatagattcacaattcggtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattca |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273884 |
tgttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattca |
45273785 |
T |
|
| Q |
312 |
ttcagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgc |
377 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273784 |
tccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgc |
45273719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 45282327 - 45281963
Alignment:
| Q |
13 |
tactaccgcaattgtcttgtctctgttaccgttgacttcatctttggatcatctgctaccttgatccaacactctacgatcattgtaagaaagcctggca |
112 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45282327 |
tactaccgcaattgtcttgtctcgggtaccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaagcctggca |
45282228 |
T |
|
| Q |
113 |
aagggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcatt |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282227 |
aagggcaattcaacacaattactgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcatt |
45282128 |
T |
|
| Q |
213 |
gttcccagatagattcacaattcggtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcat |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282127 |
gttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcat |
45282028 |
T |
|
| Q |
313 |
tcagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgc |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282027 |
ccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgc |
45281963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 381
Target Start/End: Complemental strand, 45293665 - 45293299
Alignment:
| Q |
15 |
ctaccgcaattgtcttgtctctgttaccgttgacttcatctttggatcatctgctaccttgatccaacactctacgatcattgtaagaaagcctggcaaa |
114 |
Q |
| |
|
||||||||||||| || |||||| ||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||| | | |
|
|
| T |
45293665 |
ctaccgcaattgtgttatctctggtaccgttgatttcatctttggaacatctgccaccttgatccaagactctacgatcatcgtaagaatgccttcccca |
45293566 |
T |
|
| Q |
115 |
gggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || || || ||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
45293565 |
aatcaattcaacacaattaccgcagacgggtcatacgtgaataaattgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgt |
45293466 |
T |
|
| Q |
215 |
tcccagatagattcacaattcggtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattc |
314 |
Q |
| |
|
|||| | |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
45293465 |
tccctcaaagattcacaattaaatcttacttgggcagaccatggaaggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatcc |
45293366 |
T |
|
| Q |
315 |
agatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgccaac |
381 |
Q |
| |
|
||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||| |||||| |
|
|
| T |
45293365 |
agatggatggaccccttggcaaggagaacattttgaaaacacatgttactatgcagagtacgccaac |
45293299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 381
Target Start/End: Complemental strand, 45302625 - 45302259
Alignment:
| Q |
15 |
ctaccgcaattgtcttgtctctgttaccgttgacttcatctttggatcatctgctaccttgatccaacactctacgatcattgtaagaaagcctggcaaa |
114 |
Q |
| |
|
||||||||||||| || |||||| ||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||| | | |
|
|
| T |
45302625 |
ctaccgcaattgtgttatctctggtaccgttgatttcatctttggaacatctgccaccttgatccaagactctacgatcatcgtaagaatgccttcccca |
45302526 |
T |
|
| Q |
115 |
gggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || || || ||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
45302525 |
aatcaattcaacacaattaccgcagacgggtcatacgtgaataaattgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgt |
45302426 |
T |
|
| Q |
215 |
tcccagatagattcacaattcggtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattc |
314 |
Q |
| |
|
|||| | |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
45302425 |
tccctcaaagattcacaattaaatcttacttgggcagaccatggaaggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatcc |
45302326 |
T |
|
| Q |
315 |
agatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgccaac |
381 |
Q |
| |
|
||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||| |||||| |
|
|
| T |
45302325 |
agatggatggaccccttggcaaggagaacattttgaaaacacatgttactatgcagagtacgccaac |
45302259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 155 - 347
Target Start/End: Complemental strand, 45270409 - 45270217
Alignment:
| Q |
155 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagacc |
254 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| || | ||||||| || ||||||||||||||||||| |
|
|
| T |
45270409 |
tgaatatgaatactggtattgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaaaattcacagttaggtcttacttgggcagacc |
45270310 |
T |
|
| Q |
255 |
atggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaa |
347 |
Q |
| |
|
|||| | || | ||||| | ||| ||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| || ||||||||| |
|
|
| T |
45270309 |
atggcaaaatgaatcaaaggcagtcatcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaa |
45270217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 45270555 - 45270466
Alignment:
| Q |
15 |
ctaccgcaattgtcttgtctctgttaccgttgacttcatctttggatcatctgctaccttgatccaacactctacgatcattgtaagaaa |
104 |
Q |
| |
|
||||||||| ||| || |||| | |||| ||||||||||||||||| ||||||| |||||||||||| |||||| ||||| || ||||| |
|
|
| T |
45270555 |
ctaccgcaactgtgttatctccggtaccattgacttcatctttggaacatctgccaccttgatccaaagctctaccatcatcgtgagaaa |
45270466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University