View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4245_low_6 (Length: 342)

Name: NF4245_low_6
Description: NF4245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4245_low_6
NF4245_low_6
[»] chr2 (1 HSPs)
chr2 (16-342)||(38125019-38125346)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 38125346 - 38125019
Alignment:
Q  16 caccttccaaaagaggaactctgcagacagctgaatgcaaacactctttggtggcagtaattgttgatacatgttgcctttccatgcttccccaagcttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38125346 caccttccaaaagaggaactctgcagacagctgaatgcaaacactctttggtggcagtaattgttgatacatgttgcctttccatgcttccccaagcttc 38125247  T
Q  116 taataactttaactatcaaaaacaacaatacatcagtcaagaatattgaattaattacnnnnnnnnttt-ggtagatattaatcaaaattaggtttactt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||    
T  38125246 taataactttaactatcaaaaacaacaatacatcagtcaagaatattgaattaattacaaaaaaaattttggtagatattaatcaaaattaggtttactt 38125147  T
Q  215 cttacttggtaatataatataaaagcttttttcatttcaagcttttctcttgcaaactgtatcttctttttcataacagtatttctggacttggtgagac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38125146 cttacttggtaatataatataaaagcttttttcatttcaagcttttctcttgcaaactgtatcttctttttcataacagtatttctggacttggtgagac 38125047  T
Q  315 catcccagacacatatcaaattgctcta 342  Q
    ||||||||||||||||||||||||||||    
T  38125046 catcccagacacatatcaaattgctcta 38125019  T

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