View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_high_17 (Length: 272)
Name: NF4246_high_17
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_high_17 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: scaffold0250 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 4378 - 4136
Alignment:
| Q |
13 |
tccttgacaaatttgagattgtcctcaacttggctttcaaattgctgctttttggatttaaattcctcctcttttgactgaaactccttctcttgtcctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4378 |
tccttgacaaatttgagattgtcctcaacttggctttcaaattgctgctttttggatttaaattcctcctcttttgactgaaactccttctcttgtcctt |
4279 |
T |
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| Q |
113 |
tgaatatcttttctcttgattcaaactcatcagtggcacttcatatggaattctaccacaaccgatttcatctttggacatttaactaccttgatccaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4278 |
tgaatatcttttctcttgattcaaactcatcagtggcacttcatgtggaattctaccgcaaccgatttcatctttggacatttaactaccttgatccaaa |
4179 |
T |
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| Q |
213 |
tttaagaacacggattctccaacaaacaggaaacatgggcaca |
255 |
Q |
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| T |
4178 |
tttaagaacacggattctccaacaaacaggaaacatgggcaca |
4136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 44951171 - 44951284
Alignment:
| Q |
27 |
gagattgtcctcaacttggctttcaaattgctgctttttggatttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttct |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |
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| T |
44951171 |
gagattgtcctcaacttggctttcaaattgctgctttttggatttaaattcctcctcttttgactgaaactccttctcttgttctttgaatttattttct |
44951270 |
T |
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| Q |
127 |
cttgattcaaactc |
140 |
Q |
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| T |
44951271 |
cttgattcaaactc |
44951284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 39473637 - 39473701
Alignment:
| Q |
70 |
ttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttctcttgattc |
134 |
Q |
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| T |
39473637 |
ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattc |
39473701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 44624000 - 44623951
Alignment:
| Q |
16 |
ttgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt |
65 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||| |
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| T |
44624000 |
ttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt |
44623951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 39422018 - 39422082
Alignment:
| Q |
70 |
ttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttctcttgattc |
134 |
Q |
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| T |
39422018 |
ttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttcttttctattgattc |
39422082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 39414971 - 39415038
Alignment:
| Q |
73 |
aattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttctcttgattcaaactc |
140 |
Q |
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| T |
39414971 |
aattccccctcttttgagtggaactccttcatttgttctctgaatttcttttcttttgattcaaactc |
39415038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 39215448 - 39215391
Alignment:
| Q |
69 |
tttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttct |
126 |
Q |
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|||||||||||||| ||||||||| |||||||||| |||| ||| |||| ||||||| |
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| T |
39215448 |
tttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttct |
39215391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 39389346 - 39389391
Alignment:
| Q |
72 |
aaattcctcctcttttgactgaaactccttctcttgtcctttgaat |
117 |
Q |
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| T |
39389346 |
aaattcctcctcttttgattgaaactccttcacttttccttcgaat |
39389391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 33560847 - 33560803
Alignment:
| Q |
73 |
aattcctcctcttttgactgaaactccttctcttgtcctttgaat |
117 |
Q |
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| T |
33560847 |
aattcctcctcttttgattgaaactccttcacttgtcctttgaat |
33560803 |
T |
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